Description Objects from the Class Slots Methods Author(s) References See Also Examples
Represent known transcript isoforms as annoted by Ensembl
Objects can be created by calls of the form new("Transcript", ...)
.
id
:Object of class "character"
, represents the gene identifier that should be used to retrieve the tanscript level annotation
type
:Object of class "character"
, represents the type of identifiers used to specify the gene e.g. hgnc\_symbol, entrezgene and ensembl\_gene\_id
transcriptSize
:Object of class "numeric"
, represents the size of the transcripts in the plot
numOfTranscripts
:Object of class "numeric"
, should not be used bu users
biomart
:Object of class "Mart"
, containing the links to the Ensembl database. This object should be created with the useMart function of the biomaRt package
ens
:Object of class "data.frame"
, should not be used by the users. Contains the output from the biomaRt query
signature(.Object = "Transcript")
: ...
signature(.Object = "Transcript")
: ...
signature(object = "Transcript")
: ...
Steffen Durinck
http://www.stat.berkeley.edu/~steffen/
objects to See Also as gdPlot
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Loading required package: biomaRt
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