makeGSEAplots: Produce GSEA plots

In HTSanalyzeR: Gene set over-representation, enrichment and network analyses for high-throughput screens

Description

This is an internal function.

Usage

makeGSEAplots(geneList, geneSet, exponent, filepath, filename, 
output='png', ...)

Arguments

geneList	a numeric or integer vector of phenotypes in descending or ascending order with elements named by their Entrez IDs (no duplicates nor NA values)
geneSet	a character vector of gene identifiers of a gene set
exponent	a single integer or numeric value used in weighting phenotypes in GSEA
filepath	a single character value specifying the directory where the GSEA plot will be stored
filename	a single character value specifying the name of the file where the GSEA plot will be stored
output	a single character value specifying the format of output image: "pdf" or "png"
...	other arguments used by the function 'png' or 'pdf' such as width and height

Details

This is an internal function.

Author(s)

Benilton Carvalho, Xin Wang

HTSanalyzeR documentation built on Oct. 31, 2019, 7:10 a.m.