Files in HTSanalyzeR
Gene set over-representation, enrichment and network analyses for high-throughput screens
DESCRIPTION
NAMESPACE
inst/CITATION
inst/CHANGES
inst/templates/blue_cruklogo.gif
inst/templates/Rlogo.png
inst/templates/bordercorner.gif
inst/templates/htsanalyzer.css
inst/templates/goatcomputer.png
inst/doc/HTSanalyzeR-Vignette.R
inst/doc/HTSanalyzeR-Vignette.pdf
inst/doc/HTSanalyzeR-Vignette.Rnw
vignettes/Figure.pdf
vignettes/HTSanalyzeR-Vignette.Rnw
R/HTSanalyzeR4cellHTS2.R
R/pairwiseGsea.R
R/paraCheck.R
R/KeggGeneSets.R
R/zzz.R
R/writeReportHTSA.R
R/NWA-methods.R
R/pairwiseGseaPlot.R
R/collectionGsea.R
R/gseaPlots.R
R/gseaScores.R
R/multiHyperGeoTest.R
R/GOGeneSets.R
R/classUnions.R
R/aggregatePvals.R
R/FDRcollectionGsea.R
R/AllClasses.R
R/biogridDataDownload.R
R/hyperGeoTest.R
R/pairwisePhenoMannWhit.R
R/gseaScoresBatchParallel.R
R/gseaScoresBatch.R
R/annotationConvertor.R
R/AllGenerics.R
R/drosoAnnotationConvertor.R
R/analyzeGeneSetCollections.R
R/duplicateRemover.R
R/cellHTS2OutputStatTests.R
R/networkPlot.R
R/writeHtml.R
R/GSCA-methods.R
R/mammalAnnotationConvertor.R
R/HTSanalyzeR-internal.R
R/networkAnalysis.R
R/celAnnotationConvertor.R
R/permutationPvalueCollectionGsea.R
man/viewEnrichMap.Rd
man/hyperGeoTest.Rd
man/writeHTSAHtmlTail.Rd
man/makeOverlapTable.Rd
man/getTopGeneSets.Rd
man/writeHTSAHtmlSummary.Rd
man/mammalAnnotationConvertor.Rd
man/pairwiseGsea.Rd
man/cellHTS2OutputStatTests.Rd
man/pairwisePhenoMannWhit.Rd
man/appendGSTerms.Rd
man/viewSubNet.Rd
man/analyzeGeneSetCollections.Rd
man/aggregatePvals.Rd
man/changes.Rd
man/pairwiseGseaPlot.Rd
man/GSCA-class.Rd
man/summarize.Rd
man/preprocess.Rd
man/GenHTSAHtmlRowUnit.Rd
man/plotEnrichMap.Rd
man/celAnnotationConvertor.Rd
man/networkAnalysis.Rd
man/makeGSEAplots.Rd
man/paraCheck.Rd
man/duplicateRemover.Rd
man/drosoAnnotationConvertor.Rd
man/reportAll.Rd
man/plotSubNet.Rd
man/writeHTSAHtmlTab.Rd
man/writeHTSAHtmlHead.Rd
man/multiHyperGeoTest.Rd
man/report.Rd
man/gseaScores.Rd
man/gseaPlots.Rd
man/htmlAttrVectorPaste.Rd
man/interactome.Rd
man/writeHTSAHtmlTable.Rd
man/viewGSEA.Rd
man/GOGeneSets.Rd
man/HTSanalyzeR.Rd
man/FDRcollectionGsea.Rd
man/HTSanalyzeR4cellHTS2.Rd
man/analyze.Rd
man/NWA-class.Rd
man/annotationConvertor.Rd
man/biogridDataDownload.Rd
man/collectionGsea.Rd
man/networkPlot.Rd
man/KeggGeneSets.Rd
man/writeReportHTSA.Rd
man/plotGSEA.Rd
man/permutationPvalueCollectionGsea.Rd
man/data-KcViab.Rd
build/vignette.rds
data/KcViab_Norm.RData
data/KcViab_NWA.RData
data/KcViab_Data4Enrich.RData
data/Biogrid_DM_Mat.RData
data/datalist
data/KcViab_PVals.RData
data/Biogrid_DM_Interactome.RData
data/KcViab_GSCA.RData
