API for HTSanalyzeR
Gene set over-representation, enrichment and network analyses for high-throughput screens

Global functions
Biogrid_DM_Interactome Man page
Biogrid_DM_Mat Man page
FDRcollectionGsea Man page Source code
GOGeneSets Man page Source code
GSCA Man page
GSCA-class Man page
GenHTSAHtmlRowUnit Man page Source code
HTSanalyzeR Man page
HTSanalyzeR-package Man page
HTSanalyzeR4cellHTS2 Man page Source code
KcViab_Data4Enrich Man page
KcViab_GSCA Man page
KcViab_NWA Man page
KcViab_Norm Man page
KcViab_PVals Man page
KeggGeneSets Man page Source code
NWA Man page
NWA-class Man page
aggregatePvals Man page Source code
analyze Man page
analyze,GSCA-method Man page
analyze,NWA-method Man page
analyzeGeneSetCollections Man page Source code
annotationConvertor Man page Source code
appendGSTerms Man page
appendGSTerms,GSCA-method Man page
biogridDataDownload Man page Source code
celAnnotationConvertor Man page Source code
cellHTS2OutputStatTests Man page Source code
changes Man page Source code
collectionGsea Man page Source code
drosoAnnotationConvertor Man page Source code
duplicateRemover Man page Source code
getTopGeneSets Man page
getTopGeneSets,GSCA-method Man page
gseaPlots Man page Source code
gseaScores Man page Source code
gseaScoresBatch Man page Source code
gseaScoresBatchParallel Man page Source code
htmlAttrVectorPaste Man page Source code
hyperGeoTest Man page Source code
interactome Man page
interactome,NWA-method Man page
makeGSEAplots Man page Source code
makeOverlapTable Man page Source code
mammalAnnotationConvertor Man page Source code
multiHyperGeoTest Man page Source code
networkAnalysis Man page Source code
networkPlot Man page Source code
onLoad Source code
pairwiseGsea Man page Source code
pairwiseGseaPlot Man page Source code
pairwisePhenoMannWhit Man page Source code
paraCheck Man page Source code
permutationPvalueCollectionGsea Man page Source code
plotEnrichMap Man page
plotEnrichMap,GSCA-method Man page
plotGSEA Man page
plotGSEA,GSCA-method Man page
plotSubNet Man page
plotSubNet,NWA-method Man page
preprocess Man page
preprocess,GSCA-method Man page
preprocess,NWA-method Man page
report Man page
report,GSCA-method Man page
report,NWA-method Man page
reportAll Man page
reportAll,GSCA_Or_NULL,NWA_Or_NULL-method Man page
show Man page
show,GSCA-method Man page
show,NWA-method Man page
summarize Man page
summarize,GSCA-method Man page
summarize,NWA-method Man page
viewEnrichMap Man page
viewEnrichMap,GSCA-method Man page
viewGSEA Man page
viewGSEA,GSCA-method Man page
viewSubNet Man page
viewSubNet,NWA-method Man page
writeHTSAHtmlHead Man page Source code
writeHTSAHtmlSummary Man page Source code
writeHTSAHtmlTab Man page Source code
writeHTSAHtmlTable Man page Source code
writeHTSAHtmlTail Man page Source code
writeHits Man page
writeHits,GSCA-method Man page
writeReportHTSA Man page Source code
HTSanalyzeR documentation built on May 2, 2018, 4:30 a.m.