ConsistencyView: Visualize the estimate cell cycle compared to control.

In MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Description

Estimate cell cycle time in different samples by linear fitting of beta scores.

Usage

ConsistencyView(
  beta,
  ctrlname,
  treatname,
  main = NULL,
  filename = NULL,
  width = 5,
  height = 4,
  ...
)

Arguments

beta	Data frame, which has columns of ctrlname and other samples.
ctrlname	A character, specifying the names of control samples.
treatname	A character, specifying the name of treatment samples.
main	As in 'plot'.
filename	Figure file name to create on disk. Default filename="NULL", which means no output.
width	As in ggsave.
height	As in ggsave.
...	Other available parameters in ggsave.

Value

An object created by ggplot, which can be assigned and further customized.

Author(s)

Wubing Zhang

Examples

file3 = file.path(system.file("extdata", package = "MAGeCKFlute"),
"testdata/mle.gene_summary.txt")
dd = ReadBeta(file3)
ConsistencyView(dd, ctrlname = "dmso", treatname = "plx")

MAGeCKFlute documentation built on Nov. 8, 2020, 5:40 p.m.