DensityView: Density plot for gene beta scores in Control and Treatment

Description Usage Arguments Value Author(s) See Also Examples

View source: R/DensityView.R

Description

Plot the density of gene beta scores in two samples.

Usage

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DensityView(
  beta,
  samples = NULL,
  main = NULL,
  xlab = "Beta Score",
  filename = NULL,
  width = 5,
  height = 4,
  ...
)

Arguments

beta

Data frame, including samples as columns.

samples

Character, specifying sample names in beta.

main

As in 'plot'.

xlab

As in 'plot'.

filename

Figure file name to create on disk. Default filename="NULL", which means don't save the figure on disk.

width

As in ggsave.

height

As in ggsave.

...

Other available parameters in ggsave.

Value

An object created by ggplot, which can be assigned and further customized.

Author(s)

Wubing Zhang

See Also

ViolinView

Examples

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file3 = file.path(system.file("extdata", package = "MAGeCKFlute"),
"testdata/mle.gene_summary.txt")
dd = ReadBeta(file3)
DensityView(dd, samples=c("dmso", "plx"))
#or
DensityView(dd[, c("dmso", "plx")])

MAGeCKFlute documentation built on Nov. 8, 2020, 5:40 p.m.