DensityView: Density plot for gene beta scores in Control and Treatment

In MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Description

Plot the density of gene beta scores in two samples.

Usage

DensityView(
  beta,
  samples = NULL,
  main = NULL,
  xlab = "Beta Score",
  filename = NULL,
  width = 5,
  height = 4,
  ...
)

Arguments

beta	Data frame, including samples as columns.
samples	Character, specifying sample names in beta.
main	As in 'plot'.
xlab	As in 'plot'.
filename	Figure file name to create on disk. Default filename="NULL", which means don't save the figure on disk.
width	As in ggsave.
height	As in ggsave.
...	Other available parameters in ggsave.

Value

An object created by ggplot, which can be assigned and further customized.

Author(s)

Wubing Zhang

See Also

ViolinView

Examples

file3 = file.path(system.file("extdata", package = "MAGeCKFlute"),
"testdata/mle.gene_summary.txt")
dd = ReadBeta(file3)
DensityView(dd, samples=c("dmso", "plx"))
#or
DensityView(dd[, c("dmso", "plx")])

MAGeCKFlute documentation built on Nov. 8, 2020, 5:40 p.m.