DensityDiffView: Density plot

In MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Description

Plot the density of beta score deviations.

Usage

DensityDiffView(
  beta,
  ctrlname = "Control",
  treatname = "Treatment",
  main = NULL,
  filename = NULL,
  width = 5,
  height = 4,
  ...
)

Arguments

beta	Data frame, including ctrlname and treatname as columns.
ctrlname	A character, specifying the name of control sample.
treatname	A character, specifying the name of treatment sample.
main	As in 'plot'.
filename	Figure file name to create on disk. Default filename="NULL", which means no output.
width	As in ggsave.
height	As in ggsave.
...	Other parameters in ggsave.

Value

An object created by ggplot, which can be assigned and further customized.

Author(s)

Wubing Zhang

Examples

file3 = file.path(system.file("extdata", package = "MAGeCKFlute"),
"testdata/mle.gene_summary.txt")
dd = ReadBeta(file3)
# Density plot of beta score deviation between control and treatment
DensityDiffView(dd, ctrlname = "dmso", treatname = "plx")

MAGeCKFlute documentation built on Nov. 8, 2020, 5:40 p.m.