MapRatesView: View mapping ratio

In MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Description

View mapping ratio of each sample

Usage

MapRatesView(
  countSummary,
  Label = "Label",
  Reads = "Reads",
  Mapped = "Mapped",
  filename = NULL,
  width = 5,
  height = 4,
  ...
)

Arguments

countSummary	A data frame, which contains columns of 'Label', 'Reads', and 'Mapped'
Label	A character, indicating column (in countSummary) of sample names.
Reads	A character, indicating column (in countSummary) of total reads.
Mapped	A character, indicating column (in countSummary) of mapped reads.
filename	Figure file name to create on disk. Default filename="NULL", which means don't save the figure on disk.
width	As in ggsave.
height	As in ggsave.
...	Other available parameters in ggsave.

Value

An object created by ggplot, which can be assigned and further customized.

Author(s)

Wubing Zhang

Examples

file4 = file.path(system.file("extdata", package = "MAGeCKFlute"),
"testdata/countsummary.txt")
countsummary = read.delim(file4, check.names = FALSE)
MapRatesView(countsummary)

MAGeCKFlute documentation built on Nov. 8, 2020, 5:40 p.m.