EnrichedFilter: Simplify the enrichment results based on Jaccard index
In MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/EnrichedFilter.R
Description
Simplify the enrichment results based on Jaccard index
Usage
1
EnrichedFilter(enrichment = enrichment, cutoff = 0.8)
Arguments
enrichment
A data frame of enrichment result.
cutoff
A numeric, specifying the cutoff of Jaccard index between two pathways.
Value
A data frame.
Author(s)
Yihan Xiao
Examples
1
2
3
4
5
6
data(geneList, package = "DOSE")
## Not run:
enrichRes <- enrich.HGT(geneList, keytype = "entrez")
EnrichedFilter(enrichRes)
## End(Not run)
MAGeCKFlute documentation built on Nov. 8, 2020, 5:40 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/EnrichedFilter.R
Description
Simplify the enrichment results based on Jaccard index
Usage
1 | EnrichedFilter(enrichment = enrichment, cutoff = 0.8)
|
Arguments
enrichment |
A data frame of enrichment result. |
cutoff |
A numeric, specifying the cutoff of Jaccard index between two pathways. |
Value
A data frame.
Author(s)
Yihan Xiao
Examples
1 2 3 4 5 6 | data(geneList, package = "DOSE")
## Not run:
enrichRes <- enrich.HGT(geneList, keytype = "entrez")
EnrichedFilter(enrichRes)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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