hclustView: Cluster and view cluster tree

In MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Description

Cluster and view cluster tree

Usage

hclustView(
  d,
  method = "average",
  label_cols = NULL,
  bar_cols = NULL,
  main = NA,
  xlab = NA,
  horiz = TRUE,
  ...
)

Arguments

d	A dissimilarity structure as produced by dist.
method	The agglomeration method to be used. This should be (an unambiguous abbreviation of) one of "ward.D", "ward.D2", "single", "complete", "average" (= UPGMA), "mcquitty" (= WPGMA), "median" (= WPGMC) or "centroid" (= UPGMC).
label_cols	A vector to be used as label's colors for the dendrogram.
bar_cols	Either a vector or a matrix, which will be plotted as a colored bar.
main	As in 'plot'.
xlab	As in 'plot'.
horiz	Logical indicating if the dendrogram should be drawn horizontally or not.
...	Arguments to be passed to methods, such as graphical parameters (see par).

Value

Plot figure on open device.

Author(s)

Wubing Zhang

Examples

label_cols = rownames(USArrests)
hclustView(dist(USArrests), label_cols=label_cols, bar_cols=label_cols)

MAGeCKFlute documentation built on Nov. 8, 2020, 5:40 p.m.