ViolinView: Violin plot

In MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Description

Plots the violin of beta scores in Control and Treatment samples.

Usage

ViolinView(
  beta,
  samples = NULL,
  main = NULL,
  ylab = "Beta Score",
  filename = NULL,
  width = 5,
  height = 4,
  ...
)

Arguments

beta	Data frame, , including samples as columns.
samples	Character, specifying the name of samples to be compared.
main	As in 'plot'.
ylab	As in 'plot'.
filename	Figure file name to create on disk. Default filename="NULL", which means don't save the figure on disk.
width	As in ggsave.
height	As in ggsave.
...	Other available parameters in function 'ggsave'.

Value

An object created by ggplot, which can be assigned and further customized.

Author(s)

Wubing Zhang

See Also

DensityView

Examples

file3 = file.path(system.file("extdata", package = "MAGeCKFlute"),
"testdata/mle.gene_summary.txt")
dd = ReadBeta(file3)
ViolinView(dd, samples=c("dmso", "plx"))
#or
ViolinView(dd[, c("dmso", "plx")])

MAGeCKFlute documentation built on Nov. 8, 2020, 5:40 p.m.