top.count: Determines the number for which each gene has highest membership value in all cluster

Description

This function calculates the number,for which each gene appears to have the top membership score in the partition matrix of clusters produced by mfuzz.

Usage

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Arguments

cl

object of class “flclust”

Value

The function generates a vector containing a count for each gene, which is just the number of times that particular gene has acquired the top membership score.

Author(s)

Lokesh Kumar and Matthias E. Futschik (http://itb.biologie.hu-berlin.de/~futschik)

Examples

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if (interactive()){
data(yeast)
# Data pre-processing
yeastF <- filter.NA(yeast)
yeastF <- fill.NA(yeastF)
yeastF <- standardise(yeastF)

# Soft clustering and visualisation
cl <- mfuzz(yeastF,c=20,m=1.25)
top.count(cl)
}

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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