top.count: Determines the number for which each gene has highest...

Description Usage Arguments Value Author(s) Examples

View source: R/top.count.R

Description

This function calculates the number,for which each gene appears to have the top membership score in the partition matrix of clusters produced by mfuzz.

Usage

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Arguments

cl

object of class “flclust”

Value

The function generates a vector containing a count for each gene, which is just the number of times that particular gene has acquired the top membership score.

Author(s)

Lokesh Kumar and Matthias E. Futschik (http://itb.biologie.hu-berlin.de/~futschik)

Examples

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if (interactive()){
data(yeast)
# Data pre-processing
yeastF <- filter.NA(yeast)
yeastF <- fill.NA(yeastF)
yeastF <- standardise(yeastF)

# Soft clustering and visualisation
cl <- mfuzz(yeastF,c=20,m=1.25)
top.count(cl)
}

Mfuzz documentation built on May 31, 2017, 10:59 a.m.

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