Files in RCy3
Functions to Access and Control Cytoscape

LICENSE

NEWS

NAMESPACE

.travis.yml

DESCRIPTION

README.md tests/runTests.R

docs/pkgdown.css

docs/docsearch.css

docs/authors.html

docs/pkgdown.yml

docs/404.html

docs/docsearch.js

docs/LICENSE-text.html

docs/pkgdown.js

docs/link.svg

docs/index.html

docs/articles/Upgrading-existing-scripts.html

docs/articles/Cytoscape-and-graphNEL.html

docs/articles/Phylogenetic-trees.html

docs/articles/Overview-of-RCy3.html

docs/articles/Custom-Graphics.html

docs/articles/Group-nodes.html

docs/articles/Network-functions-and-visualization.html

docs/articles/Cytoscape-and-iGraph.html

docs/articles/Cancer-networks-and-data.html

docs/articles/Identifier-mapping.html

docs/articles/Importing-data.html

docs/articles/index.html

docs/articles/Cytoscape-and-NDEx.html

docs/articles/Filtering-Networks.html

docs/reference/toggleGraphicsDetails.html

docs/reference/diffusionBasic.html

docs/reference/setNodeBorderColorMapping.html

docs/reference/closeSession.html

docs/reference/setNodeLabelDefault.html

docs/reference/getNetworkZoom.html

docs/reference/getAllEdges.html

docs/reference/unhideAll.html

docs/reference/setEdgeLabelBypass.html

docs/reference/setNodeBorderOpacityDefault.html

docs/reference/deleteSelfLoops.html

docs/reference/selectAllEdges.html

docs/reference/setNodeSizeDefault.html

docs/reference/setEdgeOpacityMapping.html

docs/reference/setNodeCustomRingChart.html

docs/reference/getFirstNeighbors.html

docs/reference/createVisualStyle.html

docs/reference/unhideNodes.html

docs/reference/setNodeBorderWidthBypass.html

docs/reference/setNodeCustomRadialGradient.html

docs/reference/hidePanel.html

docs/reference/exportVisualStyles.html

docs/reference/getNetworkCount.html

docs/reference/setEdgeLineStyleMapping.html

docs/reference/cyrestPOST.html

docs/reference/openSession.html

docs/reference/setEdgeTargetArrowShapeMapping.html

docs/reference/commandsRun.html

docs/reference/cytoscapeMemoryStatus.html

docs/reference/getArrowShapes.html

docs/reference/setCurrentNetwork.html

docs/reference/importFilters.html

docs/reference/clearNetworkCenterBypass.html

docs/reference/setEdgeSourceArrowMapping.html

docs/reference/hideNodes.html

docs/reference/cytoscapePing.html

docs/reference/getNodeColor.html

docs/reference/setNodeCustomHeatMapChart.html

docs/reference/setNodeFontFaceDefault.html

docs/reference/setEdgeColorMapping.html

docs/reference/setNodeSelectionColorDefault.html

docs/reference/exportNetworkToNDEx.html

docs/reference/setEdgeLabelColorDefault.html

docs/reference/setNodeWidthDefault.html

docs/reference/updateNetworkInNDEx.html

docs/reference/getAllNodes.html

docs/reference/createCompositeFilter.html

docs/reference/setEdgeLabelOpacityDefault.html

docs/reference/setNodeHeightMapping.html

docs/reference/setEdgeTooltipMapping.html

docs/reference/setEdgeTooltipDefault.html

docs/reference/layoutCopycat.html

docs/reference/setEdgeLineWidthMapping.html

docs/reference/getStyleDependencies.html

docs/reference/RCy3.html

docs/reference/cyrestAPI.html

docs/reference/commandQuit.html

docs/reference/cybrowserDialog.html

docs/reference/addCyNodes.html

docs/reference/getTableColumnNames.html

docs/reference/cybrowserVersion.html

docs/reference/getEdgeLineWidth.html

docs/reference/setNodeLabelMapping.html

docs/reference/commandOpenDialog.html

docs/reference/clearSelection.html

docs/reference/getVisualPropertyNames.html

docs/reference/cybrowserList.html

docs/reference/getNodeCount.html

docs/reference/exportNetwork.html

docs/reference/hideSelectedNodes.html

docs/reference/deleteNetwork.html

docs/reference/selectNodes.html

docs/reference/getTableColumns.html

docs/reference/getEdgeTargetArrowShape.html

docs/reference/exportImage.html

docs/reference/setEdgeTargetArrowShapeBypass.html

docs/reference/setNodeHeightBypass.html

docs/reference/cytoscapeNumberOfCores.html

docs/reference/setNetworkZoomBypass.html

docs/reference/selectEdgesConnectingSelectedNodes.html

docs/reference/floatPanel.html

docs/reference/createColumnFilter.html

docs/reference/setEdgeFontSizeBypass.html

docs/reference/setNodeBorderOpacityMapping.html

docs/reference/cytoscapeApiVersions.html

docs/reference/setVisualPropertyDefault.html

docs/reference/updateStyleDefaults.html

docs/reference/createGroupByColumn.html

docs/reference/getNodeWidth.html

docs/reference/selectEdgesAdjacentToSelectedNodes.html

docs/reference/invertEdgeSelection.html

docs/reference/createDegreeFilter.html

docs/reference/setEdgeOpacityDefault.html

docs/reference/setNodeFillOpacityMapping.html

docs/reference/setEdgeColorBypass.html

docs/reference/setNodeWidthBypass.html

docs/reference/createSubnetwork.html

docs/reference/setEdgeSourceArrowShapeDefault.html

docs/reference/deleteTableColumn.html

docs/reference/clearEdgePropertyBypass.html

docs/reference/installApp.html

docs/reference/setNodeFontFaceBypass.html

docs/reference/lockNodeDimensions.html

docs/reference/makeSimpleIgraph.html

docs/reference/selectAllNodes.html

docs/reference/getCollectionName.html

docs/reference/setNodeCustomBoxChart.html

docs/reference/setEdgeSourceArrowColorMapping.html

docs/reference/hideSelectedEdges.html

docs/reference/getSelectedEdgeCount.html

docs/reference/deleteSelectedEdges.html

docs/reference/createIgraphFromNetwork.html

docs/reference/deleteGroup.html

docs/reference/clearNodeOpacityBypass.html

docs/reference/collapseGroup.html

docs/reference/setNodeCustomPosition.html

docs/reference/dockPanel.html

docs/reference/setEdgeOpacityBypass.html

docs/reference/listGroups.html

docs/reference/getUninstalledApps.html

docs/reference/setEdgeTargetArrowColorBypass.html

docs/reference/setNodeBorderColorDefault.html

docs/reference/getEdgeInfo.html

docs/reference/setNodeShapeBypass.html

docs/reference/setEdgeTargetArrowColorMapping.html

docs/reference/setNetworkCenterBypass.html

docs/reference/setNodeSizeMapping.html

docs/reference/commandsAPI.html

docs/reference/expandGroup.html

docs/reference/getEdgeProperty.html

docs/reference/commandPause.html

docs/reference/selectFirstNeighbors.html

docs/reference/setNodeCustomPieChart.html

docs/reference/cloneNetwork.html

docs/reference/setNodeTooltipDefault.html

docs/reference/setNodeTooltipBypass.html

docs/reference/getGroupInfo.html

docs/reference/importVisualStyles.html

docs/reference/setEdgeFontFaceBypass.html

docs/reference/getSelectedNodeCount.html

docs/reference/createNetworkFromGraph.html

docs/reference/getVisualPropertyDefault.html

docs/reference/setNodeComboOpacityMapping.html

docs/reference/setNodePropertyBypass.html

docs/reference/getSelectedNodes.html

docs/reference/getLayoutPropertyType.html

docs/reference/cyrestGET.html

docs/reference/setEdgeLabelDefault.html

docs/reference/createNetworkFromIgraph.html

docs/reference/disableApp.html

docs/reference/getEdgeSelectionColorDefault.html

docs/reference/setNodeLabelColorDefault.html

docs/reference/getAppUpdates.html

docs/reference/setNodeLabelOpacityBypass.html

docs/reference/setNetworkPropertyBypass.html

docs/reference/selectNodesConnectedBySelectedEdges.html

docs/reference/unhideEdges.html

docs/reference/importNetworkFromNDEx.html

docs/reference/setEdgeSourceArrowShapeMapping.html

docs/reference/copyVisualStyle.html

docs/reference/getNodeSize.html

docs/reference/getCollectionList.html

docs/reference/saveSession.html

docs/reference/selectEdges.html

docs/reference/deleteDuplicateEdges.html

docs/reference/getNetworkViews.html

docs/reference/commandsPOST.html

docs/reference/removeNodeCustomGraphics.html

docs/reference/setNodeSizeBypass.html

docs/reference/setNodeFontFaceMapping.html

docs/reference/cybrowserShow.html

docs/reference/getNodeSelectionColorDefault.html

docs/reference/createGroup.html

docs/reference/setStyleDependencies.html

docs/reference/setEdgeLabelOpacityMapping.html

docs/reference/getNetworkSuid.html

docs/reference/cybrowserHide.html

docs/reference/setNodeLabelColorMapping.html

docs/reference/addCyEdges.html

docs/reference/getNodeShapes.html

docs/reference/setNodeHeightDefault.html

docs/reference/setEdgeLineWidthDefault.html

docs/reference/uninstallApp.html

docs/reference/setEdgeSourceArrowColorBypass.html

docs/reference/cybrowserSend.html

docs/reference/getFilterList.html

docs/reference/layoutNetwork.html

docs/reference/getLayoutNames.html

docs/reference/setEdgeFontFaceMapping.html

docs/reference/syncNodeCustomGraphicsSize.html

docs/reference/getSelectedEdges.html

docs/reference/commandSleep.html

docs/reference/setNodeShapeDefault.html

docs/reference/getAppStatus.html

docs/reference/cyrestDELETE.html

docs/reference/setNodeColorBypass.html

docs/reference/deleteAllNetworks.html

docs/reference/getCollectionNetworks.html

docs/reference/matchArrowColorToEdge.html

docs/reference/commandEcho.html

docs/reference/setEdgeFontFaceDefault.html

docs/reference/getTableColumnTypes.html

docs/reference/setVisualStyle.html

docs/reference/makeSimpleGraph.html

docs/reference/getInstalledApps.html

docs/reference/getBackgroundColorDefault.html

docs/reference/getLayoutPropertyNames.html

docs/reference/setEdgeLabelMapping.html

docs/reference/getEdgeColor.html

docs/reference/getAvailableApps.html

docs/reference/createGraphFromNetwork.html

docs/reference/exportFilters.html

docs/reference/renameNetwork.html

docs/reference/mapTableColumn.html

docs/reference/clearNodePropertyBypass.html

docs/reference/setEdgeLineStyleBypass.html

docs/reference/setNodeLabelOpacityDefault.html

docs/reference/setNodeShapeMapping.html

docs/reference/diffusionAdvanced.html

docs/reference/setNodeLabelColorBypass.html

docs/reference/getEdgeLineStyle.html

docs/reference/clearNetworkZoomBypass.html

docs/reference/invertNodeSelection.html

docs/reference/setEdgeLineWidthBypass.html

docs/reference/enableApp.html

docs/reference/openAppStore.html

docs/reference/deleteSelectedNodes.html

docs/reference/setEdgeTargetArrowMapping.html

docs/reference/setNodeLabelBypass.html

docs/reference/setEdgeTooltipBypass.html

docs/reference/fitContent.html

docs/reference/setNodeFontSizeMapping.html

docs/reference/deleteVisualStyle.html

docs/reference/getNetworkName.html

docs/reference/getTableValue.html

docs/reference/setEdgeFontSizeDefault.html

docs/reference/setNodeTooltipMapping.html

docs/reference/setNodeBorderWidthMapping.html

docs/reference/importNetworkFromFile.html

docs/reference/cytoscapeFreeMemory.html

docs/reference/getLayoutPropertyValue.html

docs/reference/hideEdges.html

docs/reference/getEdgeCount.html

docs/reference/cytoscapeVersionInfo.html

docs/reference/setEdgeTargetArrowColorDefault.html

docs/reference/getNetworkList.html

docs/reference/setNodeBorderColorBypass.html

docs/reference/setNodeFillOpacityDefault.html

docs/reference/setNodeCustomLinearGradient.html

docs/reference/getLineStyles.html

docs/reference/getNodePosition.html

docs/reference/getDisabledApps.html

docs/reference/cyrestPUT.html

docs/reference/clearNetworkPropertyBypass.html

docs/reference/updateStyleMapping.html

docs/reference/AddToGroup.html

docs/reference/setEdgeSourceArrowShapeBypass.html

docs/reference/setEdgeTargetArrowShapeDefault.html

docs/reference/setNodeCustomLineChart.html

docs/reference/setEdgeSourceArrowColorDefault.html

docs/reference/getNetworkProperty.html

docs/reference/index.html

docs/reference/getAppInformation.html

docs/reference/setNodeBorderOpacityBypass.html

docs/reference/getLayoutNameMapping.html

docs/reference/getCollectionSuid.html

docs/reference/setNodeColorMapping.html

docs/reference/setEdgeLabelColorMapping.html

docs/reference/setCurrentView.html

docs/reference/renameTableColumn.html

docs/reference/setNodeColorDefault.html

docs/reference/clearEdgeBends.html

docs/reference/setEdgeLabelOpacityBypass.html

docs/reference/getNetworkNDExId.html

docs/reference/getNodeHeight.html

docs/reference/setNodeOpacityBypass.html

docs/reference/setNodeCustomBarChart.html

docs/reference/getNetworkViewSuid.html

docs/reference/applyFilter.html

docs/reference/setEdgeLabelColorBypass.html

docs/reference/setEdgeColorDefault.html

docs/reference/setEdgeSelectionColorDefault.html

docs/reference/getNetworkCenter.html

docs/reference/setNodeLabelOpacityMapping.html

docs/reference/setNodeFontSizeDefault.html

docs/reference/updateApp.html

docs/reference/setEdgePropertyBypass.html

docs/reference/loadTableData.html

docs/reference/hideAllPanels.html

docs/reference/setBackgroundColorDefault.html

docs/reference/deleteStyleMapping.html

docs/reference/createNetworkFromDataFrames.html

docs/reference/commandRunFile.html

docs/reference/commandsHelp.html

docs/reference/setEdgeFontSizeMapping.html

docs/reference/getVisualStyleNames.html

docs/reference/setNodeWidthMapping.html

docs/reference/mapVisualProperty.html

docs/reference/commandsGET.html

docs/reference/bundleEdges.html

docs/reference/setEdgeLineStyleDefault.html

docs/reference/cybrowserClose.html

docs/reference/RemoveFromGroup.html

docs/reference/setNodeBorderWidthDefault.html

docs/reference/setNodeFillOpacityBypass.html

docs/reference/setLayoutProperties.html

docs/reference/setNodeFontSizeBypass.html

docs/reference/getNodeProperty.html

R/Groups.R R/Collections.R R/StyleBypasses.R R/Apps.R R/CytoscapeSystem.R R/NetworkSelection.R R/StyleValues.R R/Commands.R R/Layouts.R R/StyleMappings.R R/Session.R R/NetworkViews.R R/StyleDefaults.R R/RCy3-deprecated.R R/UserInterface.R R/CyNDEx.R R/Networks.R R/Tables.R R/RCy3.R R/Tools.R R/Styles.R R/Filters.R R/RCy3-utils.R R/StyleDependencies.R man/RCy3.Rd man/getEdgeInfo.Rd man/addCyNodes.Rd man/getAllEdges.Rd man/addCyEdges.Rd man/selectAllEdges.Rd man/getEdgeLineWidth.Rd man/exportFilters.Rd man/commandOpenDialog.Rd man/setNodeWidthMapping.Rd man/setNodeFontSizeMapping.Rd man/getTableColumnTypes.Rd man/getLayoutPropertyValue.Rd man/getBackgroundColorDefault.Rd man/getAvailableApps.Rd man/setNodeCustomBarChart.Rd man/getLayoutNameMapping.Rd man/cytoscapePing.Rd man/getNetworkZoom.Rd man/setNodeColorBypass.Rd man/setEdgeColorDefault.Rd man/getNetworkViews.Rd man/clearNetworkPropertyBypass.Rd man/getNetworkCount.Rd man/deleteSelectedEdges.Rd man/setEdgeSourceArrowColorMapping.Rd man/setNodeCustomLinearGradient.Rd man/importFilters.Rd man/diffusionBasic.Rd man/setNodeLabelMapping.Rd man/setNodePropertyBypass.Rd man/setEdgeOpacityBypass.Rd man/setEdgeLabelColorMapping.Rd man/getSelectedEdgeCount.Rd man/createCompositeFilter.Rd man/setNodeFontSizeBypass.Rd man/commandQuit.Rd man/setNodeSizeBypass.Rd man/setNodeBorderWidthDefault.Rd man/listGroups.Rd man/setNodeHeightDefault.Rd man/createColumnFilter.Rd man/getEdgeSelectionColorDefault.Rd man/setEdgeLabelColorDefault.Rd man/getNodeSelectionColorDefault.Rd man/updateApp.Rd man/diffusionAdvanced.Rd man/getEdgeColor.Rd man/cloneNetwork.Rd man/setNodeShapeDefault.Rd man/getDisabledApps.Rd man/getCollectionName.Rd man/setNodeFillOpacityMapping.Rd man/commandRunFile.Rd man/selectFirstNeighbors.Rd man/getNodePosition.Rd man/getLineStyles.Rd man/openSession.Rd man/deleteGroup.Rd man/setEdgeLabelBypass.Rd man/setNodeCustomLineChart.Rd man/setCurrentNetwork.Rd man/invertEdgeSelection.Rd man/makeSimpleIgraph.Rd man/getTableValue.Rd man/layoutCopycat.Rd man/getEdgeLineStyle.Rd man/collapseGroup.Rd man/commandsHelp.Rd man/RemoveFromGroup.Rd man/mapTableColumn.Rd man/uninstallApp.Rd man/setNodeCustomBoxChart.Rd man/expandGroup.Rd man/commandEcho.Rd man/setNetworkCenterBypass.Rd man/setNodeOpacityBypass.Rd man/getUninstalledApps.Rd man/setEdgeTargetArrowShapeDefault.Rd man/deleteSelfLoops.Rd man/setNodeLabelOpacityBypass.Rd man/getAllNodes.Rd man/renameNetwork.Rd man/setEdgeLineStyleMapping.Rd man/setNodeLabelColorMapping.Rd man/cybrowserShow.Rd man/createIgraphFromNetwork.Rd man/setNodeWidthDefault.Rd man/getGroupInfo.Rd man/createVisualStyle.Rd man/setEdgeSourceArrowColorDefault.Rd man/commandPause.Rd man/commandsGET.Rd man/setEdgeColorMapping.Rd man/cytoscapeFreeMemory.Rd man/clearEdgePropertyBypass.Rd man/mergeNetworks.Rd man/mapVisualProperty.Rd man/exportVisualStyles.Rd man/setEdgeTargetArrowShapeBypass.Rd man/getNodeColor.Rd man/deleteDuplicateEdges.Rd man/setEdgeSourceArrowColorBypass.Rd man/setNetworkZoomBypass.Rd man/hidePanel.Rd man/clearSelection.Rd man/setNodeBorderColorBypass.Rd man/setNetworkPropertyBypass.Rd man/setEdgeLineWidthDefault.Rd man/setEdgeFontFaceBypass.Rd man/setNodeBorderWidthMapping.Rd man/getInstalledApps.Rd man/getNetworkProperty.Rd man/setVisualStyle.Rd man/createDegreeFilter.Rd man/setNodeHeightMapping.Rd man/getAppStatus.Rd man/createSubnetwork.Rd man/selectNodesConnectedBySelectedEdges.Rd man/selectEdges.Rd man/unhideEdges.Rd man/setEdgeLabelOpacityBypass.Rd man/hideAllPanels.Rd man/setNodeSelectionColorDefault.Rd man/exportImage.Rd man/getVisualPropertyNames.Rd man/setEdgeColorBypass.Rd man/loadTableData.Rd man/setEdgeTooltipDefault.Rd man/getEdgeTargetArrowShape.Rd man/cyrestDELETE.Rd man/hideSelectedNodes.Rd man/syncNodeCustomGraphicsSize.Rd man/invertNodeSelection.Rd man/setNodeBorderWidthBypass.Rd man/setEdgeLineStyleBypass.Rd man/cybrowserVersion.Rd man/setNodeWidthBypass.Rd man/cybrowserList.Rd man/setEdgeLabelColorBypass.Rd man/dockPanel.Rd man/getNetworkList.Rd man/getNetworkCenter.Rd man/setEdgeLineStyleDefault.Rd man/getNodeProperty.Rd man/cytoscapeVersionInfo.Rd man/closeSession.Rd man/setLayoutProperties.Rd man/createGraphFromNetwork.Rd man/disableApp.Rd man/copyVisualStyle.Rd man/setBackgroundColorDefault.Rd man/setEdgeSourceArrowShapeBypass.Rd man/commandsRun.Rd man/setNodeBorderColorDefault.Rd man/setNodeLabelOpacityMapping.Rd man/setNodeFontSizeDefault.Rd man/getVisualStyleNames.Rd man/getArrowShapes.Rd man/setEdgeOpacityDefault.Rd man/setEdgeSourceArrowShapeDefault.Rd man/getNodeHeight.Rd man/setNodeLabelColorDefault.Rd man/createGroupByColumn.Rd man/deleteTableColumn.Rd man/getCurrentStyle.Rd man/getSelectedEdges.Rd man/setNodeFontFaceMapping.Rd man/setEdgeSelectionColorDefault.Rd man/getTableColumnNames.Rd man/setVisualPropertyDefault.Rd man/setNodeFontFaceBypass.Rd man/floatPanel.Rd man/setNodeTooltipMapping.Rd man/deleteVisualStyle.Rd man/deleteAllNetworks.Rd man/getNodeShapes.Rd man/openAppStore.Rd man/cyrestPUT.Rd man/clearNetworkZoomBypass.Rd man/unhideNodes.Rd man/removeNodeCustomGraphics.Rd man/getEdgeCount.Rd man/enableApp.Rd man/setEdgeLabelOpacityMapping.Rd man/deleteSelectedNodes.Rd man/setEdgeLabelOpacityDefault.Rd man/selectNodes.Rd man/matchArrowColorToEdge.Rd man/createNetworkFromGraph.Rd man/importNetworkFromNDEx.Rd man/getAppInformation.Rd man/getNetworkSuid.Rd man/getNodeSize.Rd man/setNodeCustomPieChart.Rd man/deleteStyleMapping.Rd man/updateStyleMapping.Rd man/unhideAll.Rd man/getLayoutPropertyType.Rd man/setNodeHeightBypass.Rd man/createNetworkFromDataFrames.Rd man/cytoscapeNumberOfCores.Rd man/setEdgeFontSizeMapping.Rd man/getFirstNeighbors.Rd man/getCollectionSuid.Rd man/clearEdgeBends.Rd man/exportNetwork.Rd man/getAppUpdates.Rd man/setEdgeFontSizeBypass.Rd man/setNodeShapeBypass.Rd man/setEdgeSourceArrowShapeMapping.Rd man/getNetworkName.Rd man/setEdgeFontFaceMapping.Rd man/createGroup.Rd man/setNodeBorderOpacityMapping.Rd man/setNodeComboOpacityMapping.Rd man/cyrestAPI.Rd man/setNodeBorderOpacityBypass.Rd man/hideSelectedEdges.Rd man/setNodeLabelDefault.Rd man/getLayoutPropertyNames.Rd man/setNodeFillOpacityBypass.Rd man/makeSimpleGraph.Rd man/setEdgeLabelMapping.Rd man/deleteNetwork.Rd man/layoutNetwork.Rd man/setNodeCustomHeatMapChart.Rd man/setEdgePropertyBypass.Rd man/renameTableColumn.Rd man/setEdgeFontSizeDefault.Rd man/cybrowserSend.Rd man/setNodeCustomRadialGradient.Rd man/analyzeNetwork.Rd man/setEdgeTargetArrowColorBypass.Rd man/getStyleDependencies.Rd man/getNodeCount.Rd man/setEdgeSourceArrowMapping.Rd man/setStyleDependencies.Rd man/getFilterList.Rd man/setEdgeTargetArrowMapping.Rd man/selectEdgesConnectingSelectedNodes.Rd man/cybrowserHide.Rd man/cyrestGET.Rd man/createNetworkFromIgraph.Rd man/cytoscapeMemoryStatus.Rd man/saveSession.Rd man/getNetworkNDExId.Rd man/hideEdges.Rd man/commandSleep.Rd man/clearNetworkCenterBypass.Rd man/setNodeBorderColorMapping.Rd man/cyrestPOST.Rd man/getVisualPropertyDefault.Rd man/getLayoutNames.Rd man/setNodeShapeMapping.Rd man/applyFilter.Rd man/setEdgeTargetArrowColorDefault.Rd man/getNetworkViewSuid.Rd man/setNodeLabelColorBypass.Rd man/setNodeFillOpacityDefault.Rd man/setEdgeFontFaceDefault.Rd man/setEdgeOpacityMapping.Rd man/setNodeSizeDefault.Rd man/cytoscapeApiVersions.Rd man/getCollectionList.Rd man/installApp.Rd man/commandsPOST.Rd man/importNetworkFromFile.Rd man/getCollectionNetworks.Rd man/lockNodeDimensions.Rd man/updateNetworkInNDEx.Rd man/getTableColumns.Rd man/setNodeTooltipDefault.Rd man/setNodeLabelBypass.Rd man/cybrowserDialog.Rd man/commandsAPI.Rd man/setEdgeTooltipBypass.Rd man/getSelectedNodeCount.Rd man/setNodeTooltipBypass.Rd man/setEdgeLineWidthMapping.Rd man/importVisualStyles.Rd man/clearNodeOpacityBypass.Rd man/setNodeBorderOpacityDefault.Rd man/selectAllNodes.Rd man/exportNetworkToNDEx.Rd man/setNodeColorDefault.Rd man/bundleEdges.Rd man/clearNodePropertyBypass.Rd man/setEdgeLabelDefault.Rd man/getNodeWidth.Rd man/setEdgeLineWidthBypass.Rd man/setEdgeTargetArrowColorMapping.Rd man/selectEdgesAdjacentToSelectedNodes.Rd man/setNodeFontFaceDefault.Rd man/setNodeLabelOpacityDefault.Rd man/updateStyleDefaults.Rd man/setNodeCustomPosition.Rd man/setEdgeTargetArrowShapeMapping.Rd man/toggleGraphicsDetails.Rd man/setCurrentView.Rd man/hideNodes.Rd man/getEdgeProperty.Rd man/setNodeSizeMapping.Rd man/setNodeColorMapping.Rd man/fitContent.Rd man/setNodeCustomRingChart.Rd man/getSelectedNodes.Rd man/cybrowserClose.Rd man/setEdgeTooltipMapping.Rd man/AddToGroup.Rd

inst/CITATION

inst/unitTests/test_RCy3.R

inst/extdata/prok_tax_from_silva.tsv

inst/extdata/galFiltered.sif

inst/extdata/galExpData.csv

inst/extdata/tutorial-brc-mut-dataset.robj

inst/extdata/tutorial-ovc-expr-mean-dataset.robj

inst/extdata/virus_prok_cor_abundant.tsv

inst/extdata/tutorial-brc-expr-mean-dataset.robj

inst/extdata/tutorial-ovc-mut-dataset.robj

inst/extdata/phylotree.newick

inst/extdata/lesmis.txt

inst/extdata/phage_ids_with_affiliation.tsv

inst/doc/Phylogenetic-trees.Rmd

inst/doc/Upgrading-existing-scripts.html

inst/doc/Group-nodes.Rmd inst/doc/Importing-data.R inst/doc/Cytoscape-and-graphNEL.Rmd

inst/doc/Cytoscape-and-graphNEL.html

inst/doc/Cytoscape-and-graphNEL.R

inst/doc/Phylogenetic-trees.html

inst/doc/Upgrading-existing-scripts.Rmd inst/doc/Importing-data.Rmd

inst/doc/Overview-of-RCy3.html

inst/doc/Custom-Graphics.html

inst/doc/Cytoscape-and-NDEx.Rmd inst/doc/Identifier-mapping.R inst/doc/Identifier-mapping.Rmd

inst/doc/Group-nodes.html

inst/doc/Upgrading-existing-scripts.R inst/doc/Cytoscape-and-iGraph.R inst/doc/Network-functions-and-visualization.Rmd

inst/doc/Network-functions-and-visualization.html

inst/doc/Overview-of-RCy3.R inst/doc/Custom-Graphics.Rmd

inst/doc/Cytoscape-and-iGraph.html

inst/doc/Filtering-Networks.Rmd inst/doc/Cancer-networks-and-data.Rmd

inst/doc/Cancer-networks-and-data.html

inst/doc/Cancer-networks-and-data.R

inst/doc/Identifier-mapping.html

inst/doc/Phylogenetic-trees.R inst/doc/Overview-of-RCy3.Rmd inst/doc/Network-functions-and-visualization.R

inst/doc/Importing-data.html

inst/doc/Cytoscape-and-iGraph.Rmd inst/doc/Custom-Graphics.R

inst/doc/Cytoscape-and-NDEx.html

inst/doc/Group-nodes.R inst/doc/Cytoscape-and-NDEx.R

inst/doc/Filtering-Networks.html

inst/doc/Filtering-Networks.R

build/vignette.rds

vignettes/Phylogenetic-trees.Rmd vignettes/Group-nodes.Rmd vignettes/Cytoscape-and-graphNEL.Rmd vignettes/Upgrading-existing-scripts.Rmd vignettes/Importing-data.Rmd vignettes/Cytoscape-and-NDEx.Rmd vignettes/Identifier-mapping.Rmd vignettes/Network-functions-and-visualization.Rmd vignettes/Custom-Graphics.Rmd vignettes/Filtering-Networks.Rmd vignettes/Cancer-networks-and-data.Rmd vignettes/Overview-of-RCy3.Rmd vignettes/Cytoscape-and-iGraph.Rmd

RCy3 documentation built on Nov. 21, 2020, 2 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

RCy3
Functions to Access and Control Cytoscape

Files in RCy3
Functions to Access and Control Cytoscape

R Package Documentation

Browse R Packages

We want your feedback!

RCy3 Functions to Access and Control Cytoscape

Files in RCy3 Functions to Access and Control Cytoscape

R Package Documentation

Browse R Packages

We want your feedback!

RCy3
Functions to Access and Control Cytoscape

Files in RCy3
Functions to Access and Control Cytoscape