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This package is a pipeline to identify the key gene regulators in a biological process, for example in cell differentiation and in cell development after stimulation. There are four major steps in this pipeline: (1) differential expression analysis; (2) regulator-target network inference; (3) enrichment analysis; and (4) regulators scoring and ranking.
Package details |
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Author | Weiyang Tao [cre, aut], Aridaman Pandit [aut] |
Bioconductor views | DifferentialExpression FunctionalPrediction GeneExpression GeneSetEnrichment GeneTarget Network NetworkEnrichment NetworkInference RNASeq Transcription Transcriptomics TwoChannel |
Maintainer | Weiyang Tao <w.tao-2@umcutrecht.nl> |
License | GPL (>= 2) |
Version | 1.0.1 |
Package repository | View on Bioconductor |
Installation |
Install the latest version of this package by entering the following in R:
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