SPLINTER: Splice Interpreter Of Transcripts

SPLINTER provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.

AuthorDiana Low
Date of publicationNone
MaintainerDiana Low <dlow@imcb.a-star.edu.sg>
LicenseGPL-2
Version1.0.0

View on Bioconductor

Files in this package

SPLINTER/DESCRIPTION
SPLINTER/NAMESPACE
SPLINTER/NEWS
SPLINTER/NEWS.md
SPLINTER/R
SPLINTER/R/main_splinter.R SPLINTER/R/primerpcr.R
SPLINTER/SPLINTER.Rproj
SPLINTER/build
SPLINTER/build/vignette.rds
SPLINTER/data
SPLINTER/data/compatible_cds.rda
SPLINTER/data/compatible_tx.rda
SPLINTER/data/pcr_result1.rda
SPLINTER/data/primers.rda
SPLINTER/data/region_minus_exon.rda
SPLINTER/data/roi.rda
SPLINTER/data/splice_data.rda
SPLINTER/data/splice_fasta.rda
SPLINTER/data/thecds.rda
SPLINTER/data/theexons.rda
SPLINTER/data/valid_cds.rda
SPLINTER/data/valid_tx.rda
SPLINTER/inst
SPLINTER/inst/doc
SPLINTER/inst/doc/vignette.R
SPLINTER/inst/doc/vignette.Rmd
SPLINTER/inst/doc/vignette.pdf
SPLINTER/inst/extdata
SPLINTER/inst/extdata/Mus_musculus.Ensembl.NCBIM37.65.partial.gtf
SPLINTER/inst/extdata/mt_chr14.bam
SPLINTER/inst/extdata/mt_chr14.bam.bai
SPLINTER/inst/extdata/skipped_exons.txt
SPLINTER/inst/extdata/wt_chr14.bam
SPLINTER/inst/extdata/wt_chr14.bam.bai
SPLINTER/man
SPLINTER/man/addEnsemblAnnotation.Rd SPLINTER/man/callPrimer3.Rd SPLINTER/man/checkPrimer.Rd SPLINTER/man/compatible_cds.Rd SPLINTER/man/compatible_tx.Rd SPLINTER/man/eventOutcomeCompare.Rd SPLINTER/man/eventOutcomeTranslate.Rd SPLINTER/man/eventPlot.Rd SPLINTER/man/extendROI.Rd SPLINTER/man/extractSpliceEvents.Rd SPLINTER/man/extractSpliceSites.Rd SPLINTER/man/findCompatibleEvents.Rd SPLINTER/man/findCompatibleExon.Rd SPLINTER/man/findExactOverlaps.Rd SPLINTER/man/findTX.Rd SPLINTER/man/findTermination.Rd SPLINTER/man/getPCRsizes.Rd SPLINTER/man/getRegionDNA.Rd SPLINTER/man/insertRegion.Rd SPLINTER/man/makeROI.Rd SPLINTER/man/makeUniqueIDs.Rd SPLINTER/man/matchExons.Rd SPLINTER/man/metaremove.Rd SPLINTER/man/pcr_result1.Rd SPLINTER/man/plot_seqlogo.Rd SPLINTER/man/primers.Rd SPLINTER/man/psiPlot.Rd SPLINTER/man/region_minus_exon.Rd SPLINTER/man/removeRegion.Rd SPLINTER/man/remvalue.Rd SPLINTER/man/roi.Rd SPLINTER/man/splice_data.Rd SPLINTER/man/splice_fasta.Rd SPLINTER/man/splitPCRhit.Rd SPLINTER/man/thecds.Rd SPLINTER/man/theexons.Rd SPLINTER/man/valid_cds.Rd SPLINTER/man/valid_tx.Rd
SPLINTER/vignettes
SPLINTER/vignettes/vignette.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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