checkPrimer: checkPrimer
In SPLINTER: Splice Interpreter of Transcripts
Description
Usage
Arguments
Value
Author(s)
Examples
Description
checkPrimer
Usage
1
checkPrimer(pp, genome, roi = NULL)
Arguments
pp
data.frame defining primers, or output of callPrimer3.
minimal columns = PRIMER_LEFT_SEQUENCE,PRIMER_RIGHT_SEQUENCE
genome
BSgenome object
roi
makeROI object
Value
list of GRanges with primer locations
Author(s)
Diana Low
Examples
1
2
3
4
5
# create a primer pair
roi
primer_pair <- data.frame(PRIMER_LEFT_SEQUENCE="agctcttgaaattggagctgac",
PRIMER_RIGHT_SEQUENCE="cttagaaagaacaggaaatcc",
stringsAsFactors=FALSE)
SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
checkPrimer
Usage
1 | checkPrimer(pp, genome, roi = NULL)
|
Arguments
pp |
data.frame defining primers, or output of |
genome |
BSgenome object |
roi |
|
Value
list of GRanges with primer locations
Author(s)
Diana Low
Examples
1 2 3 4 5 | # create a primer pair
roi
primer_pair <- data.frame(PRIMER_LEFT_SEQUENCE="agctcttgaaattggagctgac",
PRIMER_RIGHT_SEQUENCE="cttagaaagaacaggaaatcc",
stringsAsFactors=FALSE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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