findCompatibleExon: findCompatibleExon
In SPLINTER: Splice Interpreter of Transcripts
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/main_splinter.R
Description
Finds compatible exon in annotation with the one present in roi object
Usage
1
findCompatibleExon(tx, roi, verbose = FALSE)
Arguments
tx
GRangesList object of transcripts
roi
makeROI object contaning event information
verbose
logical. printouts and messages.
Value
list of length 3
(1) GRangesList hits
(2) Number of transcripts
(3) Original number of input transcripts
Author(s)
Diana Low
Examples
1
compatible_exons <- findCompatibleExon(valid_cds,roi)
SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/main_splinter.R
Description
Finds compatible exon in annotation with the one present in roi object
Usage
1 | findCompatibleExon(tx, roi, verbose = FALSE)
|
Arguments
tx |
GRangesList object of transcripts |
roi |
|
verbose |
logical. printouts and messages. |
Value
list of length 3
(1) GRangesList hits
(2) Number of transcripts
(3) Original number of input transcripts
Author(s)
Diana Low
Examples
1 | compatible_exons <- findCompatibleExon(valid_cds,roi)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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