findCompatibleExon

Description

Finds compatible exon in annotation with the one present in roi object

Usage

1
findCompatibleExon(tx, roi, verbose = FALSE)

Arguments

tx

GRangesList object of transcripts

roi

makeROI object contaning event information

verbose

logical. printouts and messages.

Value

list of length 3
(1) GRangesList hits
(2) Number of transcripts
(3) Original number of input transcripts

Author(s)

Diana Low

Examples

1
compatible_exons <- findCompatibleExon(valid_cds,roi)