extendROI: extendROI

In SPLINTER: Splice Interpreter of Transcripts

Description

extend the span of the current ROI by n number of up/downstream exon(s) by modifying roi_range within the makeROI object while retaining legacy sites by keeping $roi and $flank

Usage

extendROI(roi, tx, up = 0, down = 0, type = 1)

Arguments

roi	makeROI object
tx	GRangesList transcript list to pull regions from
up	integer. number of exons to extend upstream
down	integer. number of exons to extend downstream
type	integer. 1=full cassette, 2=flank only

Value

makeROI object with modified ranges

Examples

extendROI(roi,valid_tx,up=1)

SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.