extendROI: extendROI

Description Usage Arguments Value Examples

View source: R/main_splinter.R

Description

extend the span of the current ROI by n number of up/downstream exon(s) by modifying roi_range within the makeROI object while retaining legacy sites by keeping $roi and $flank

Usage

1
extendROI(roi, tx, up = 0, down = 0, type = 1)

Arguments

roi

makeROI object

tx

GRangesList transcript list to pull regions from

up

integer. number of exons to extend upstream

down

integer. number of exons to extend downstream

type

integer. 1=full cassette, 2=flank only

Value

makeROI object with modified ranges

Examples

1

SPLINTER documentation built on Nov. 17, 2017, 11:11 a.m.