findTX: findTX

In SPLINTER: Splice Interpreter of Transcripts

Description

Given an ENSEMBL id, find all transcripts that matches id

Usage

findTX(id, db, tx, valid = FALSE, verbose = FALSE)

Arguments

id	character. transcript identification (currently ENSEMBL gene names)
db	TxDb object
tx	GRangesList
valid	logical. check if in multiples of 3 [TRUE] for CDS translation.
verbose	logical. turn messages on/off.

Value

GRangesList

Author(s)

Diana Low

Examples

valid_cds <-findTX(id=splice_data$data[2,]$ID,tx=thecds,db=txdb,valid=FALSE)

SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.