primers: primers
In SPLINTER: Splice Interpreter of Transcripts
Description
Usage
Format
Value
Examples
Description
primers designed using Primer3 for sample data
Usage
1
data("primers")
Format
A data frame with 5 observations on the following 28 variables.
ia numeric vector
PRIMER_LEFT_SEQUENCEa character vector
PRIMER_RIGHT_SEQUENCEa character vector
PRIMER_LEFT_TMa numeric vector
PRIMER_RIGHT_TMa numeric vector
PRIMER_LEFT_posa numeric vector
PRIMER_LEFT_lena numeric vector
PRIMER_RIGHT_posa numeric vector
PRIMER_RIGHT_lena numeric vector
PRIMER_PAIR_PENALTYa numeric vector
PRIMER_LEFT_PENALTYa numeric vector
PRIMER_RIGHT_PENALTYa numeric vector
PRIMER_LEFT_GC_PERCENTa numeric vector
PRIMER_RIGHT_GC_PERCENTa numeric vector
PRIMER_LEFT_SELF_ANY_THa numeric vector
PRIMER_RIGHT_SELF_ANY_THa numeric vector
PRIMER_LEFT_SELF_END_THa numeric vector
PRIMER_RIGHT_SELF_END_THa numeric vector
PRIMER_LEFT_HAIRPIN_THa numeric vector
PRIMER_RIGHT_HAIRPIN_THa numeric vector
PRIMER_LEFT_END_STABILITYa numeric vector
PRIMER_RIGHT_END_STABILITYa numeric vector
PRIMER_LEFT_TEMPLATE_MISPRIMINGa numeric vector
PRIMER_RIGHT_TEMPLATE_MISPRIMINGa numeric vector
PRIMER_PAIR_COMPL_ANY_THa numeric vector
PRIMER_PAIR_COMPL_END_THa numeric vector
PRIMER_PAIR_PRODUCT_SIZEa numeric vector
PRIMER_PAIR_TEMPLATE_MISPRIMINGa numeric vector
Value
Dataframe of primer design results
Examples
1
SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.
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Description Usage Format Value Examples
Description
primers designed using Primer3 for sample data
Usage
1 | data("primers")
|
Format
A data frame with 5 observations on the following 28 variables.
ia numeric vector
PRIMER_LEFT_SEQUENCEa character vector
PRIMER_RIGHT_SEQUENCEa character vector
PRIMER_LEFT_TMa numeric vector
PRIMER_RIGHT_TMa numeric vector
PRIMER_LEFT_posa numeric vector
PRIMER_LEFT_lena numeric vector
PRIMER_RIGHT_posa numeric vector
PRIMER_RIGHT_lena numeric vector
PRIMER_PAIR_PENALTYa numeric vector
PRIMER_LEFT_PENALTYa numeric vector
PRIMER_RIGHT_PENALTYa numeric vector
PRIMER_LEFT_GC_PERCENTa numeric vector
PRIMER_RIGHT_GC_PERCENTa numeric vector
PRIMER_LEFT_SELF_ANY_THa numeric vector
PRIMER_RIGHT_SELF_ANY_THa numeric vector
PRIMER_LEFT_SELF_END_THa numeric vector
PRIMER_RIGHT_SELF_END_THa numeric vector
PRIMER_LEFT_HAIRPIN_THa numeric vector
PRIMER_RIGHT_HAIRPIN_THa numeric vector
PRIMER_LEFT_END_STABILITYa numeric vector
PRIMER_RIGHT_END_STABILITYa numeric vector
PRIMER_LEFT_TEMPLATE_MISPRIMINGa numeric vector
PRIMER_RIGHT_TEMPLATE_MISPRIMINGa numeric vector
PRIMER_PAIR_COMPL_ANY_THa numeric vector
PRIMER_PAIR_COMPL_END_THa numeric vector
PRIMER_PAIR_PRODUCT_SIZEa numeric vector
PRIMER_PAIR_TEMPLATE_MISPRIMINGa numeric vector
Value
Dataframe of primer design results
Examples
1 |
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