eventOutcomeTranslate: eventOutcomeTranslate

In SPLINTER: Splice Interpreter of Transcripts

Description

translates sequences, reports if NMD or NTC

Usage

eventOutcomeTranslate(
  seq1,
  genome,
  direction = FALSE,
  fullseq = TRUE,
  verbose = FALSE
)

Arguments

seq1	GRangesList
genome	BSGenome object
direction	logical. Report direction of sequence change.
fullseq	logical. Output full AA sequence.
verbose	logical. turn messages on/off.

Value

list of translated sequences

Author(s)

Diana LOW

Examples

suppressMessages(library(BSgenome.Mmusculus.UCSC.mm9))
bsgenome<-BSgenome.Mmusculus.UCSC.mm9
translation_results<-eventOutcomeTranslate(compatible_cds,genome=bsgenome,
 direction=TRUE)

SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.