eventOutcomeTranslate

Description

translates sequences, reports if NMD or NTC

Usage

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eventOutcomeTranslate(seq1, genome, direction = FALSE, fullseq = TRUE)

Arguments

seq1

GRangesList

genome

BSGenome object

direction

logical. Report direction of sequence change.

fullseq

logical. Output full AA sequence.

Value

list of translated sequences

Author(s)

Diana LOW

Examples

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suppressMessages(library(BSgenome.Mmusculus.UCSC.mm9))
bsgenome<-BSgenome.Mmusculus.UCSC.mm9
translation_results<-eventOutcomeTranslate(compatible_cds,genome=bsgenome,
 direction=TRUE)