annotateEvents: annotateEvents

Description Usage Arguments Value Author(s)

View source: R/main_splinter.R

Description

Gives detailed description of splicing event in terms of splicing outcome post translation. Currently supports exon skipping and intron retention events.

Usage

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annotateEvents(
  thedata,
  db,
  bsgenome,
  outputdir,
  full_output = FALSE,
  output_prefix = "results"
)

Arguments

thedata

list. output of extractSpliceEvents.

db

TxDb object

bsgenome

BSGenome object

outputdir

character. relative output directory to current location.

full_output

logical. writes out detailed text report and generate figures.

output_prefix

character. text prefix for full_output files.

Value

list containing information on (1) data.frame with splicing regions (2) splice event type

Author(s)

Diana LOW


SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.