insertRegion: insertRegion
In SPLINTER: Splice Interpreter of Transcripts
Description
Usage
Arguments
Details
Value
Author(s)
Examples
View source: R/main_splinter.R
Description
inserts a region (exon or intron) into roi object
Usage
1
insertRegion(subject, roi)
Arguments
subject
GrangesList
roi
makeROI object containg region of interest (to insert).
refer to makeROI().
Details
in the case of intron retention,
replaces exon with intron retention range
reduce() the GRanges in question
Value
GRanges object
Author(s)
Diana Low
Examples
1
2
3
#Inserts the exon defined in roi GRanges object from a GRanges/GRangesList
region_minus_exon
region_with_exon<-insertRegion(region_minus_exon,roi)
SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.
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Description Usage Arguments Details Value Author(s) Examples
View source: R/main_splinter.R
Description
inserts a region (exon or intron) into roi object
Usage
1 | insertRegion(subject, roi)
|
Arguments
subject |
GrangesList |
roi |
|
Details
in the case of intron retention, replaces exon with intron retention range reduce() the GRanges in question
Value
GRanges object
Author(s)
Diana Low
Examples
1 2 3 | #Inserts the exon defined in roi GRanges object from a GRanges/GRangesList
region_minus_exon
region_with_exon<-insertRegion(region_minus_exon,roi)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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