API for STAN
The Genomic STate ANnotation Package
| Global functions | |
|---|---|
| .HMM | Man page |
| .HMMEmission | Man page |
| .bdHMM | Man page |
| DimNames | Man page Source code |
| DirScore | Man page Source code |
| Emission | Man page Source code |
| EmissionParams | Man page Source code |
| HMM | Man page Source code |
| HMM-class | Man page |
| HMMEmission | Man page Source code |
| HMMEmission-class | Man page |
| InitProb | Man page Source code |
| LogLik | Man page Source code |
| STAN-package | Man page |
| StateNames | Man page Source code |
| Transitions | Man page Source code |
| [,HMM,ANY,ANY,ANY-method | Man page |
| [,bdHMM,ANY,ANY,ANY-method | Man page |
| bdHMM | Man page Source code |
| bdHMM-class | Man page |
| bdHMM_get_info | Source code |
| bidirEqB2 | Source code |
| bidirGetTransMat_fixed2 | Source code |
| bidirObjective2 | Source code |
| binarizeData | Man page Source code |
| c2optimize | Man page Source code |
| c2solnp2 | Source code |
| call_dpoilog | Man page Source code |
| changeParams | Source code |
| checkEmissionTwins | Source code |
| checkHMMParams | Source code |
| checkParameters | Source code |
| clusterMat | Source code |
| data2Gviz | Man page |
| emissionRevOp | Source code |
| eval_constr | Source code |
| example | Man page |
| fitBdClust | Man page Source code |
| fitHMM | Man page Source code |
| flags | Man page |
| getAvgSignal | Man page Source code |
| getConstraints | Source code |
| getDataType | Source code |
| getDim | Source code |
| getLogLik | Man page Source code |
| getPosterior | Man page Source code |
| getRevOperation | Source code |
| getSizeFactors | Man page Source code |
| getStateFlags | Source code |
| getViterbi | Man page Source code |
| initBdClust | Man page Source code |
| initBdHMM | Man page Source code |
| initHMM | Man page Source code |
| initNB | Source code |
| initPoiLog | Source code |
| matchEmission2Data | Source code |
| myQNBinom | Source code |
| myQPoiLog | Source code |
| observations | Man page |
| optimizeNB | Source code |
| optimizeNBInit | Source code |
| optimizePoiLog | Source code |
| optimizePoiLogInit | Source code |
| pilot.hg19 | Man page |
| prepareEmission | Source code |
| reformatEmissionAfterFitting | Source code |
| reorderbdHMMStates | Source code |
| revOpMultiDim | Source code |
| runningMean | Man page Source code |
| trainRegions | Man page |
| ucscGenes | Man page |
| validHMM | Source code |
| validHMMEmission | Source code |
| validbdHMM | Source code |
| viterbi2GRanges | Man page Source code |
| viterbi2Gviz | Man page Source code |
| yeastTF_SGDGenes | Man page |
| yeastTF_databychrom_ex | Man page |
