HMMEmission-class: This class is a generic container for different emission...

In STAN: The Genomic STate ANnotation Package

Description

This class is a generic container for different emission functions of Hidden Markov Models.

Slots

type

The type of emission function c('Gaussian').

parameters

A list containing the the parameters for each state.

dim

Number of dimensions.

nStates

The number of states.

Examples

nStates = 5
means = list(4,11,4,11,-1)
Sigma = lapply(list(4,4,4,4,4), as.matrix)
transMat = matrix(1/nStates, nrow=nStates, ncol=nStates)
initProb = rep(1/nStates, nStates)
HMMEmission(type='Gaussian', parameters=list(mu=means, cov=Sigma), nStates=length(means))

STAN documentation built on Nov. 8, 2020, 11:11 p.m.