viterbi2Gviz: Convert state segmentation for plotting with Gviz
In STAN: The Genomic STate ANnotation Package
Description
Usage
Arguments
Value
Description
Convert state segmentation for plotting with Gviz
Usage
1
viterbi2Gviz(viterbi, chrom, gen, from, to, statecols, col = NULL)
Arguments
viterbi
A list containing the viterbi paths as factors. The output from getViterbi.
chrom
The chromosome/sequence if to convert.
gen
The geome id, e.g. hg19, hg38 for human.
from
Genomic start poistion.
to
Genomic end poistion.
statecols
Named vector with state colors.
col
Background color.
Value
A list containing the viterbi path converted to Gviz objects for plotting.
STAN documentation built on Nov. 8, 2020, 11:11 p.m.
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Description Usage Arguments Value
Description
Convert state segmentation for plotting with Gviz
Usage
1 | viterbi2Gviz(viterbi, chrom, gen, from, to, statecols, col = NULL)
|
Arguments
viterbi |
A list containing the viterbi paths as factors. The output from getViterbi. |
chrom |
The chromosome/sequence if to convert. |
gen |
The geome id, e.g. hg19, hg38 for human. |
from |
Genomic start poistion. |
to |
Genomic end poistion. |
statecols |
Named vector with state colors. |
col |
Background color. |
Value
A list containing the viterbi path converted to Gviz objects for plotting.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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