DirScore: Get directionality score of a bdHMM
In STAN: The Genomic STate ANnotation Package
Description
Usage
Arguments
Value
Examples
Description
This function returns the directionality score of a bdHMM.
Usage
1
DirScore(bdhmm)
Arguments
bdhmm
An object of class bdHMM.
Value
Directionality score of the bdHMM after model fitting.
Examples
1
2
3
4
5
6
7
8
9
10
data(example)
bdhmm_ex = initBdHMM(observations, dStates=3, method="Gaussian", directedObs=0)
# without flags
bdhmm_fitted_noFlags = fitHMM(observations, bdhmm_ex)
DirScore(bdhmm_fitted_noFlags)
# with flags
bdhmm_fitted_flags = fitHMM(observations, bdhmm_ex, dirFlags=flags)
DirScore(bdhmm_fitted_flags)
STAN documentation built on Nov. 8, 2020, 11:11 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
This function returns the directionality score of a bdHMM.
Usage
1 | DirScore(bdhmm)
|
Arguments
bdhmm |
An object of class bdHMM. |
Value
Directionality score of the bdHMM after model fitting.
Examples
1 2 3 4 5 6 7 8 9 10 | data(example)
bdhmm_ex = initBdHMM(observations, dStates=3, method="Gaussian", directedObs=0)
# without flags
bdhmm_fitted_noFlags = fitHMM(observations, bdhmm_ex)
DirScore(bdhmm_fitted_noFlags)
# with flags
bdhmm_fitted_flags = fitHMM(observations, bdhmm_ex, dirFlags=flags)
DirScore(bdhmm_fitted_flags)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.