data2Gviz: Convert data for plotting with Gviz

In STAN: The Genomic STate ANnotation Package

Description

Convert data for plotting with Gviz

Usage

data2Gviz(obs, regions, binSize, gen, col = "black", type = "h", chrom)

Arguments

obs	The observations. A list of one or more entries containing the observation matrix (numeric) for the samples (e.g. chromosomes).
regions	GRanges object of the regions (e.g. chromosomes) stored in the viterbi path.
binSize	The bin size of the viterbi path.
gen	The geome id, e.g. hg19, hg38 for human.
col	The color of the data tracks.
type	Type of plot (See Gviz DataTrack documentation).
chrom	Chromosome in chich to create the object.

Value

A list containing the data tracks converted to Gviz objects for plotting.

STAN documentation built on Nov. 8, 2020, 11:11 p.m.