InitProb: Get initial state probabilities of a (bd)HMM

In STAN: The Genomic STate ANnotation Package

Description

This function returns the initial state probabilities of a (bd)HMM.

Usage

InitProb(hmm)

Arguments

hmm	An object of class HMM or bdHMM.

Value

The initial state probabilities as a numeric vector.

See Also

HMM, bdHMM

Examples

nStates = 5
means = list(4,11,4,11,-1)
Sigma = lapply(list(4,4,4,4,4), as.matrix)
transMat = matrix(1/nStates, nrow=nStates, ncol=nStates)
initProb = rep(1/nStates, nStates)
hmm = HMM(initProb=initProb, transMat=transMat, emission=HMMEmission(type='Gaussian', parameters=list(mu=means, cov=Sigma), nStates=length(means)), nStates=nStates, status='initial')
InitProb(hmm)

STAN documentation built on Nov. 8, 2020, 11:11 p.m.