HMMEmission: Create a HMMEmission object

In STAN: The Genomic STate ANnotation Package

Description

This function creates a HMMEmission object.

Usage

HMMEmission(type = character(), parameters = list(), nStates = numeric())

Arguments

type	The type of emission function c('Gaussian').
parameters	A list containing the the parameters for each state.
nStates	The number of states.

Value

HMMEmission

Examples

nStates = 5
means = list(4,11,4,11,-1)
Sigma = lapply(list(4,4,4,4,4), as.matrix)
transMat = matrix(1/nStates, nrow=nStates, ncol=nStates)
initProb = rep(1/nStates, nStates)
HMMEmission(type='Gaussian', parameters=list(mu=means, cov=Sigma), nStates=length(means))

STAN documentation built on Nov. 8, 2020, 11:11 p.m.