Emission: Get Emission functions of a (bd)HMM
In STAN: The Genomic STate ANnotation Package
Description
Usage
Arguments
Value
See Also
Examples
Description
This function returns the Emission functions of a (bd)HMM.
Usage
1
Emission(hmm)
Arguments
hmm
An object of class HMM or bdHMM.
Value
An object of class HMMEmission
See Also
Examples
1
2
3
4
5
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7
nStates = 5
means = list(4,11,4,11,-1)
Sigma = lapply(list(4,4,4,4,4), as.matrix)
transMat = matrix(1/nStates, nrow=nStates, ncol=nStates)
initProb = rep(1/nStates, nStates)
hmm = HMM(initProb=initProb, transMat=transMat, emission=HMMEmission(type='Gaussian', parameters=list(mu=means, cov=Sigma), nStates=length(means)), nStates=nStates, status='initial')
Emission(hmm)
STAN documentation built on Nov. 8, 2020, 11:11 p.m.
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Description Usage Arguments Value See Also Examples
Description
This function returns the Emission functions of a (bd)HMM.
Usage
1 | Emission(hmm)
|
Arguments
hmm |
An object of class HMM or bdHMM. |
Value
An object of class HMMEmission
See Also
Examples
1 2 3 4 5 6 7 | nStates = 5
means = list(4,11,4,11,-1)
Sigma = lapply(list(4,4,4,4,4), as.matrix)
transMat = matrix(1/nStates, nrow=nStates, ncol=nStates)
initProb = rep(1/nStates, nStates)
hmm = HMM(initProb=initProb, transMat=transMat, emission=HMMEmission(type='Gaussian', parameters=list(mu=means, cov=Sigma), nStates=length(means)), nStates=nStates, status='initial')
Emission(hmm)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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