Files in STAN
The Genomic STate ANnotation Package

DESCRIPTION
NAMESPACE
inst/doc/STAN-knitr.Rnw
inst/doc/STAN-knitr.pdf inst/doc/STAN-knitr.R
vignettes/STAN-knitr.Rnw
vignettes/refs.bib
R/bdHMMTransMatOptim.R R/STAN-package.R R/optimizeNB.R R/getViterbi.R R/fitBdClust.R R/utils.R R/fitHMM.R R/initBdClust.R R/bdConstraints.R R/AllClasses.R R/initBdHMM.R R/optimizePoilog.R R/initHMM.R R/getLogLik.R R/getPosterior.R
src/RAccessUtils.h
src/JointlyIndependent.cpp
src/matUtils.cpp
src/InitialProbability.h
src/PoissonLogNormal.h
src/RAccessUtils.cpp
src/Bernoulli.cpp
src/EmissionFactory.h
src/NegativeBinomial.cpp
src/DebugConstants.h
src/PoissonLogNormal.cpp
src/MultivariateGaussian.h
src/JointlyIndependent.h
src/MemoryAllocation.cpp
src/BernoulliFactory.h
src/RWrapper.h
src/TransitionMatrix.h
src/MemoryAllocation.h
src/InitialProbability.cpp
src/EmissionFunction.cpp
src/EmissionFunction.h
src/HMM.h
src/JointlyIndependentFactory.h
src/RWrapper.cpp
src/ParamContainerEmissions.cpp
src/NegativeBinomialFactory.h
src/PoissonLogNormalFactory.h
src/Multinomial.h
src/EmissionFactory.cpp
src/MultivariateGaussianFactory.h
src/Bernoulli.h
src/Makevars
src/HMM.cpp
src/MultivariateGaussian.cpp
src/ParamContainerEmissions.h
src/Multinomial.cpp
src/PoissonFactory.h
src/Poisson.cpp
src/TransitionMatrix.cpp
src/Poisson.h
src/NegativeBinomial.h
src/matUtils.h
src/MultinomialFactory.h
man/sub-HMM-ANY-ANY-ANY-method.Rd man/DimNames.Rd man/bdHMM.Rd man/ucscGenes.Rd man/runningMean.Rd man/trainRegions.Rd man/example.Rd man/getPosterior.Rd man/EmissionParams.Rd man/fitBdClust.Rd man/getAvgSignal.Rd man/HMM-class.Rd man/data2Gviz.Rd man/HMMEmission-class.Rd man/binarizeData.Rd man/InitProb.Rd man/observations.Rd man/getLogLik.Rd man/STAN-package.Rd man/initBdHMM.Rd man/HMM.Rd man/StateNames.Rd man/DirScore.Rd man/initHMM.Rd man/call_dpoilog.Rd man/viterbi2Gviz.Rd man/bdHMM-class.Rd man/flags.Rd man/getViterbi.Rd man/HMMEmission.Rd man/c2optimize.Rd man/yeastTF_SGDGenes.Rd man/Transitions.Rd man/pilot.hg19.Rd man/viterbi2GRanges.Rd man/fitHMM.Rd man/initBdClust.Rd man/LogLik.Rd man/yeastTF_databychrom_ex.Rd man/getSizeFactors.Rd man/Emission.Rd man/sub-bdHMM-ANY-ANY-ANY-method.Rd
build/vignette.rds
data/example.rda
data/yeastTF_databychrom_ex.rda
data/pilot.hg19.rda
data/ucscGenes.rda
data/trainRegions.rda
data/yeastTF_SGDGenes.rda
STAN documentation built on Nov. 1, 2018, 3:39 a.m.