getSizeFactors: Compute size factors
In STAN: The Genomic STate ANnotation Package
Description
Usage
Arguments
Value
Examples
Description
Compute size factors
Usage
1
getSizeFactors(obs, celltypes)
Arguments
obs
The observations. A list of one or more entries containing the observation matrix (numeric) for the samples (e.g. chromosomes).
celltypes
Indicates the cell type/tissue for each entry in obs.
Value
A celltype/tissue x data tracks matrix containing the size factors.
Examples
1
2
3
4
5
data(trainRegions)
celltypes = list("E123"=grep("E123", names(trainRegions)),
"E116"=grep("E116", names(trainRegions)))
sizeFactors = getSizeFactors(trainRegions, celltypes)
sizeFactors
STAN documentation built on Nov. 8, 2020, 11:11 p.m.
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Description Usage Arguments Value Examples
Description
Compute size factors
Usage
1 | getSizeFactors(obs, celltypes)
|
Arguments
obs |
The observations. A list of one or more entries containing the observation matrix ( |
celltypes |
Indicates the cell type/tissue for each entry in obs. |
Value
A celltype/tissue x data tracks matrix containing the size factors.
Examples
1 2 3 4 5 | data(trainRegions)
celltypes = list("E123"=grep("E123", names(trainRegions)),
"E116"=grep("E116", names(trainRegions)))
sizeFactors = getSizeFactors(trainRegions, celltypes)
sizeFactors
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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