Files in ScISI
In Silico Interactome
NAMESPACE
DESCRIPTION
build/vignette.rds
data/ScISIverified.rda
data/nucComp.rda
data/mappingsG.rda
data/mips2go.rda
data/arp23.rda
data/xtraGO.rda
data/redundantM.rda
data/ScISI.rda
data/krogan2mergeMGGH.rda
data/locScISI.rda
data/nAt.rda
data/expStats.rda
data/egEBI16112.rda
data/ScISIverified.R
data/arp23Y2HG.rda
data/gavin2mergeMG.rda
data/arp23Orf.rda
data/ho2mergeMGG.rda
data/arp23G.rda
data/nonGenes.rda
data/eAt2.rda
data/nAtMap.rda
data/subCompM.rda
data/ScISIC.rda
data/mapping2SysG.rda
data/eAt.rda
data/dataS.rda
data/cfia.rda
data/unwanted.rda
data/cfiaOrf.rda
R/xtraGONodes.R
R/runCompareComplex.R
R/ScISI2html.R
R/unWantedComp.R
R/sumStats.R
R/meanDeg.R
R/checkSGN.R
R/createGODataFrame.R
R/getGOInfo.R
R/createMipsDataFrame.R
R/createYeastDataObj.R
R/getLocOrfs.R
R/recCompSize.R
R/graphSumStats.R
R/initClasses.R
R/maximizeSimilarity.R
R/runAlignment.R
R/createGOMatrix.R
R/getMipsInfo.R
R/JaccardCoef.R
R/createMipsMatrix.R
R/compBijection.R
R/edgeProp.R
R/checkComplex.R
R/rmByEvi.R
R/calcGraphStats.R
R/mergeBGMat.R
R/findSubComp.R
R/getAPMSData.R
R/compareComplex.R
vignettes/bioc.bib
vignettes/vignette.Rnw
man/runCompareComplex.Rd
man/compareComplex.Rd
man/arp23.Rd
man/arp23G.Rd
man/checkComplex.Rd
man/mappingsG.Rd
man/nAtMap.Rd
man/eAt2.Rd
man/subCompM.Rd
man/krogan2mergeMGGH.Rd
man/nAt.Rd
man/redundantM.Rd
man/mips2go.Rd
man/unWantedComp.Rd
man/cfiaOrf.Rd
man/sumStats.Rd
man/createGOMatrix.Rd
man/getLocOrfs.Rd
man/ho2mergeMGG.Rd
man/gavin2mergeMG.Rd
man/mapping2SysG.Rd
man/ScISI2html.Rd
man/ID-methods.Rd
man/dataS.Rd
man/createGODataFrame.Rd
man/nonGenes.Rd
man/yeastData-class.Rd
man/edgeProp.Rd
man/graphSumStats.Rd
man/Desc-methods.Rd
man/createMipsDataFrame.Rd
man/expStats.Rd
man/xtraGONodes.Rd
man/checkSGN.Rd
man/egEBI16112.Rd
man/createMipsMatrix.Rd
man/rmByEvi.Rd
man/compBijection.Rd
man/meanDeg.Rd
man/xtraGO.Rd
man/getAPMSData.Rd
man/getGOInfo.Rd
man/cfia.Rd
man/ScISI.Rd
man/recCompSize.Rd
man/getMipsInfo.Rd
man/maximizeSimilarity.Rd
man/nucComp.Rd
man/JaccardCoef.Rd
man/calcGraphStats.Rd
man/eAt.Rd
man/createYeastDataObj.Rd
man/arp23Y2HG.Rd
man/getURL-methods.Rd
man/arp23Orf.Rd
man/findSubComp.Rd
man/runAlignment.Rd
man/locScISI.Rd
man/mergeBGMat.Rd
man/unwanted.Rd
inst/doc/vignette.R
inst/doc/vignette.Rnw
inst/doc/vignette.pdf
inst/TODO/CrystalStructures
inst/TODO/Validate
inst/extdata/complexcat_data_14112005.gz
inst/extdata/complexcat_data_18052006.gz
inst/extdata/complexcat.scheme.edit
inst/extdata/protein_network_large.jpg
inst/extdata/complexcat_data_20062005.gz
inst/extdata/Arp2_3_complex.jpg
inst/extdata/evidencecat.scheme
inst/extdata/Arp2_3_complex.png
inst/extdata/PPI_141105.tab.gz
inst/extdata/complexcat.scheme
inst/extdata/pathway/sgdPathM.rda
inst/extdata/pathway/keggM.rda
inst/extdata/pathway/biochemical_pathways.tab
inst/extdata/localization/allOrfData.txt
inst/extdata/graphs/cfiaCMG.rda
inst/extdata/graphs/cfiaAM.rda
inst/extdata/graphs/arp23AM.rda
inst/extdata/graphs/ppi1G.rda
inst/extdata/graphs/arp23BP.rda
inst/extdata/graphs/Readme
inst/extdata/graphs/arp23BPG.rda
inst/extdata/graphs/ppi1.rda
inst/extdata/graphs/cfiaCMM.rda
inst/extdata/graphs/ppi2.rda
inst/extdata/graphs/arp23G.rda
inst/extdata/graphs/ppi2G.rda
inst/extdata/graphs/arp23CMM.rda
inst/extdata/graphs/cfiaG.rda
inst/extdata/graphs/arp23CMG.rda
inst/Scripts/notesMips.R
inst/Scripts/creatingScISI.Rnw
inst/Scripts/estimateComp.R
inst/Scripts/createMipsY2HMatrix.R
inst/Scripts/createScISIC.R
inst/Scripts/C1G.rda
inst/Scripts/getMipsY2HInfo.R
inst/Scripts/estGavin06.R
inst/Scripts/estKrogan04.R
inst/Scripts/estKrogan06.R
inst/Scripts/Comments
inst/Scripts/notesOtherComps
inst/Scripts/getLocOrfs.Rnw
inst/Scripts/test1.R
inst/Scripts/graphStatistics.Rnw
inst/Scripts/sim.R
inst/Scripts/Comments2
inst/Scripts/estHo02.R
inst/Scripts/createScISI.R
inst/Scripts/estGavin02.R
inst/Scripts/ckCrystStruct.R
