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TCGAquery_MatchedCoupledSampleTypes: Retrieve multiple tissue types from the same patients.

TCGAquery_MatchedCoupledSampleTypes: Retrieve multiple tissue types from the same patients.
In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Description Usage Arguments Value Examples

View source: R/clinical.R

Description

TCGAquery_MatchedCoupledSampleTypes

Usage

1
TCGAquery_MatchedCoupledSampleTypes(barcode, typesample)

Arguments

barcode

barcode

typesample

typesample

Value

a list of samples / barcode filtered by type sample selected

Examples

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 TCGAquery_MatchedCoupledSampleTypes(c("TCGA-B0-4698-01Z-00-DX1",
                             "TCGA-B0-4698-02Z-00-DX1"),
                             c("TP","TR"))
 barcode <- c("TARGET-20-PANSBH-02A-02D","TARGET-20-PANSBH-01A-02D",
              "TCGA-B0-4698-01Z-00-DX1","TCGA-CZ-4863-02Z-00-DX1",
              "TARGET-20-PANSZZ-02A-02D","TARGET-20-PANSZZ-11A-02D",
              "TCGA-B0-4699-01Z-00-DX1","TCGA-B0-4699-02Z-00-DX1"
              )
  TCGAquery_MatchedCoupledSampleTypes(barcode,c("TR","TP"))

TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.

Related to TCGAquery_MatchedCoupledSampleTypes in TCGAbiolinks...

TCGAbiolinks index
README.md Analyzing and visualizing TCGA data Case Studies Classifiers methods Compilation of TCGA molecular subtypes Graphical User Interface (GUI) Introduction TCGAbiolinks: Clinical data TCGAbiolinks: Downloading and preparing files for analysis TCGAbiolinks: Searching, downloading and visualizing mutation files TCGAbiolinks: Searching GDC database TCGAbiolinks version bump with new functions

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