Files in TimiRGeN
Time sensitive microRNA-mRNA integration, analysis and network generation tool
NEWS
README.md
NAMESPACE
DESCRIPTION
R/quickBar.R
R/genesList.R
R/multiReg.R
R/clusterList.R
R/clustPrep.R
R/pickPair.R
R/quickTCPred.R
R/makeNet.R
R/addIds.R
R/createClusters2.R
R/clusterCheck.R
R/dloadMirdb.R
R/eNames.R
R/quickHClust.R
R/getP.R
R/quickDMap.R
R/addPrefix.R
R/nonUnique.R
R/returnCluster.R
R/hClustPrep.R
R/makeDynamic.R
R/matrixFilter.R
R/quickMap.R
R/enrichWiki.R
R/wikiMrna.R
R/quickTC.R
R/cytoMake.R
R/linearRegr.R
R/quickFuzz.R
R/gmtEnsembl.R
R/savePlots.R
R/quickDendro.R
R/getIdsMrna.R
R/corrTable.R
R/diffExpressRes.R
R/wikiList.R
R/quickReg.R
R/turnPercent.R
R/dataMiningMatrix.R
R/startObject.R
R/combineGenes.R
R/dloadMirtarbase.R
R/getIdsMir.R
R/mirMrnaInt.R
R/quickNet.R
R/quickPathwayTC.R
R/micrornaFull.R
R/dloadGmt.R
R/significantVals.R
R/quickCrossCorr.R
R/dloadTargetscan.R
R/createClusters.R
R/makeMapp.R
R/wikiMatrix.R
R/reduceWiki.R
inst/Author
inst/doc/TimiRGeN_tutorial.html
inst/doc/TimiRGeN_tutorial.Rmd
inst/doc/TimiRGeN_tutorial.R
inst/extdata/hs_gmt.rda
inst/extdata/mfuzzdata.rda
inst/extdata/clusters.rda
inst/extdata/Int_data.rda
inst/extdata/w_list_human.rda
inst/extdata/clusterdata.rda
inst/extdata/mm_gmt.rda
build/vignette.rds
tests/testthat.R
tests/testthat/test_quickNet.R
tests/testthat/test_matrixFilter.R
tests/testthat/test_mm_data.R
tests/testthat/genetic_data.rds
tests/testthat/filtered_genelist_c.rds
tests/testthat/test_wikiMrna.R
tests/testthat/IDs_mouse_mRNA.rds
tests/testthat/EnrichWiki.rds
tests/testthat/test_genesList_s.R
tests/testthat/miRDB_resuts.rds
tests/testthat/test_quickFuzz.R
tests/testthat/test_addIds_s.R
tests/testthat/wpdata.rds
tests/testthat/log2fc.rds
tests/testthat/test_diffExpressRes.R
tests/testthat/IDs_mouse_miR.rds
tests/testthat/MAE_Prefix.rds
tests/testthat/test_genesList_c.R
tests/testthat/test_interactions_df.R
tests/testthat/test_startObject.R
tests/testthat/test_getIdsMir.R
tests/testthat/test_reduceWiki.R
tests/testthat/MiningMatrix.rds
tests/testthat/Clusters.rds
tests/testthat/test_significantVals_c.R
tests/testthat/test_wikiMatrix.R
tests/testthat/test_eNames_c.R
tests/testthat/MAE_mm.rds
tests/testthat/test_turnPercent.R
tests/testthat/TargetScans_results.rds
tests/testthat/test_significantVals_s.R
tests/testthat/geneslist_c.rds
tests/testthat/corrmat.rds
tests/testthat/test_mirMrnaInt.R
tests/testthat/test_gmtEnsembl.R
tests/testthat/test_hs_data.R
tests/testthat/miRTarBase_results.rds
tests/testthat/wikimatrix.rds
tests/testthat/test_addIds_c.R
tests/testthat/net.rds
tests/testthat/test_addPrefix.R
tests/testthat/interactions.rds
tests/testthat/gene_entrez_c.rds
tests/testthat/filtered_genelist_s.rds
tests/testthat/filt_df.rds
tests/testthat/test_combineGenes.R
tests/testthat/test_dataMiningMatrix.R
tests/testthat/GenesofInterest.rds
tests/testthat/test_eNames_s.R
tests/testthat/test_quickBar.R
tests/testthat/genelist_s.rds
vignettes/D14_wikipathways.png
vignettes/D1_wikipathways.png
vignettes/D2_wikipathways.png
vignettes/D7_wikipathways.png
vignettes/reg2.png
vignettes/Fuzz.jpeg
vignettes/net2.jpeg
vignettes/NetPlot.jpeg
vignettes/corplot.png
vignettes/TimiRGeN_tutorial.Rmd
vignettes/ccplot.png
vignettes/reg1.png
vignettes/pathplot.png
vignettes/dendro.jpeg
vignettes/D3_wikipathways.png
vignettes/predred.png
data/hs_mRNA.rda
data/UUO_data.rda
data/e_list_mouse.rda
data/long_data.rda
data/mm_miR.rda
data/mm_mRNA.rda
data/hs_miR.rda
data/hs_probes.rda
data/miRTarBase.rda
data/w_list_mouse.rda
man/makeNet.Rd
man/gmtEnsembl.Rd
man/quickFuzz.Rd
man/quickDMap.Rd
man/quickNet.Rd
man/dloadTargetscan.Rd
man/e_list_mouse.Rd
man/startObject.Rd
man/wikiList.Rd
man/mm_mRNA.Rd
man/quickBar.Rd
man/hs_probes.Rd
man/createClusters2.Rd
man/getIdsMrna.Rd
man/genesList.Rd
man/quickDendro.Rd
man/clusterCheck.Rd
man/enrichWiki.Rd
man/cytoMake.Rd
man/linearRegr.Rd
man/significantVals.Rd
man/diffExpressRes.Rd
man/quickHClust.Rd
man/turnPercent.Rd
man/dloadMirtarbase.Rd
man/addIds.Rd
man/combineGenes.Rd
man/hs_mRNA.Rd
man/dloadGmt.Rd
man/returnCluster.Rd
man/quickPathwayTC.Rd
man/createClusters.Rd
man/makeMapp.Rd
man/long_data.Rd
man/quickReg.Rd
man/UUO_data.Rd
man/quickTC.Rd
man/addPrefix.Rd
man/clusterList.Rd
man/dloadMirdb.Rd
man/matrixFilter.Rd
man/wikiMrna.Rd
man/getIdsMir.Rd
man/dataMiningMatrix.Rd
man/makeDynamic.Rd
man/hs_miR.Rd
man/savePlots.Rd
man/reduceWiki.Rd
man/miRTarBase.Rd
man/quickCrossCorr.Rd
man/wikiMatrix.Rd
man/eNames.Rd
man/quickTCPred.Rd
man/mm_miR.Rd
man/multiReg.Rd
man/w_list_mouse.Rd
man/quickMap.Rd
man/mirMrnaInt.Rd
