prepareDrugSets: Prepare drug sets from a table with compound descriptors

In cTRAP: Identification of candidate causal perturbations from differential gene expression data

Description

Prepare drug sets from a table with compound descriptors

Usage

prepareDrugSets(table, id = 1, maxUniqueElems = 15)

Arguments

table	Data frame: drug descriptors
id	Integer or character: index or name of the column containing identifiers
maxUniqueElems	Numeric: maximum number of unique elements in a descriptor to consider when creating discrete drug sets

Value

Named list of characters: named drug sets with respective compound identifiers as list elements

See Also

Other functions for drug set enrichment analysis: analyseDrugSetEnrichment(), loadDrugDescriptors(), plotDrugSetEnrichment()

Examples

descriptors <- loadDrugDescriptors("NCI60")
prepareDrugSets(descriptors)

cTRAP documentation built on Nov. 8, 2020, 10:58 p.m.