API for microbiome
Microbiome Analytics

Global functions
.onAttach	Source code
ab,	Man page
abundances	Man page Source code
aggregate_rare	Man page
aggregate_taxa	Man page Source code
aggregate_top_taxa	Man page
alpha	Man page Source code
associate	Man page Source code
atlas1006	Man page
baseline	Man page Source code
bfratio	Man page
bimodality	Man page Source code
bimodality_sarle	Man page Source code
boxplot_abundance	Man page Source code
bulla	Source code
camargo	Source code
chunk_reorder	Man page Source code
cmat2table	Man page Source code
collapse_replicates	Man page
core	Man page Source code
core_abundance	Man page Source code
core_heatmap	Man page Source code
core_lineplot	Source code
core_matrix	Man page Source code
core_members	Man page Source code
coverage	Man page Source code
cross_correlate	Man page
default_colors	Man page
densityplot	Man page Source code
dietswap	Man page
divergence	Man page Source code
diversities	Man page Source code
diversities_help	Source code
diversity	Man page Source code
dominance	Man page Source code
dominance_help	Source code
dominant	Man page Source code
estimate_stability	Man page Source code
evar	Source code
evenness	Man page Source code
evenness_help	Source code
filter_prevalent	Man page
find_maxima	Source code
find_minima	Source code
find_optima	Man page Source code
gini_simpson	Source code
gktau	Man page Source code
global	Man page Source code
group_age	Man page Source code
group_bmi	Man page Source code
heat	Man page Source code
hitchip.taxonomy	Man page
hotplot	Man page Source code
inequality	Man page Source code
inequality_help	Source code
intermediate_stability	Man page Source code
inverse_simpson	Source code
is_compositional	Man page Source code
log_modulo_skewness	Man page Source code
low_abundance	Man page Source code
map_levels	Man page Source code
merge_taxa2	Man page Source code
meta	Man page Source code
microbiome	Man page
microbiome-package	Man page
multimodality	Man page Source code
neat	Man page Source code
neatsort	Man page Source code
otu	Man page
overlap	Man page Source code
peerj32	Man page
pickdata	Source code
pielou	Source code
plot_atlas	Man page Source code
plot_composition	Man page Source code
plot_core	Man page Source code
plot_density	Man page Source code
plot_frequencies	Man page Source code
plot_landscape	Man page Source code
plot_regression	Man page Source code
plot_taxa_prevalence	Man page Source code
plot_tipping	Man page Source code
potential_analysis	Man page Source code
potential_univariate	Man page Source code
prevalence	Man page Source code
prevalence_nsamples	Source code
prevalent_taxa	Man page
quiet	Man page Source code
radial_theta	Man page Source code
rare	Man page Source code
rare_abundance	Man page Source code
rare_members	Man page Source code
rarity	Man page Source code
rarity_help	Source code
read_biom2phyloseq	Man page Source code
read_csv2phyloseq	Man page Source code
read_mothur2phyloseq	Man page Source code
read_phyloseq	Man page Source code
readcount	Man page Source code
remove_obsolete_minima	Source code
remove_samples	Man page Source code
remove_taxa	Man page Source code
richness	Man page Source code
richness_help	Source code
shannon	Source code
simpson_dominance	Source code
simpson_evenness	Source code
simpson_index	Source code
skew	Source code
spreadplot	Man page
summarize_phyloseq	Man page Source code
taxa	Man page Source code
time_normalize	Man page Source code
time_sort	Man page Source code
timesplit	Man page Source code
top	Man page
top_taxa	Man page Source code
transform	Man page Source code
write_phyloseq	Man page Source code
ztransform	Man page Source code