API for rTRM
Identification of transcriptional regulatory modules from PPI networks
| Global functions | |
|---|---|
| .annotateTFclass | Source code |
| .annotateTarget | Source code |
| .checkInNetwork | Source code |
| .checkParam | Source code |
| .checkValid | Source code |
| .findNeigh | Source code |
| .getCoordinates | Source code |
| .getDefaultDb | Source code |
| .getLegend | Source code |
| .getMapFromOrg | Source code |
| .getNode | Source code |
| .getSQLresult | Source code |
| .getTFclassColors | Source code |
| .getTaxidFromOrg | Source code |
| .lum | Source code |
| annotateFreq | Man page Source code |
| annotateModule | Man page Source code |
| annotateTRM | Man page Source code |
| biogrid_hs | Man page Source code |
| biogrid_mm | Man page Source code |
| findTRM | Man page |
| getAnnotations | Man page Source code |
| getBiogridData | Man page Source code |
| getConcentricList | Man page Source code |
| getLargestComp | Man page Source code |
| getMaps | Man page Source code |
| getMatrices | Man page |
| getMotifsFromEntrezgene | Man page Source code |
| getMotifsFromSymbol | Man page Source code |
| getOrthologFromMatrix | Man page Source code |
| getOrthologs | Man page |
| getOrthologsFromBiomart | Man page Source code |
| getSequencesFromGenome | Man page Source code |
| getSimilarityMatrix | Man page Source code |
| getTFclass | Man page Source code |
| getTFclassFromEntrezgene | Man page Source code |
| getTFterms | Man page |
| initBiomart | Man page Source code |
| layout.arc | Man page |
| layout.concentric | Man page |
| plotDegree | Man page Source code |
| plotGraph | Man page Source code |
| plotTRM | Man page Source code |
| plotTRMlegend | Man page |
| processBiogrid | Man page Source code |
| rTRM | Man page |
| rTRM-package | Man page |
| removeVertices | Man page Source code |
| writeTRMreport | Man page Source code |
