processBiogrid: Process a data.frame with BioGRID data into a network for a...
In rTRM: Identification of transcriptional regulatory modules from PPI networks
Description
Usage
Arguments
Value
Author(s)
Description
Process a data.frame with BioGRID data into a network for a target organism.
Usage
1
processBiogrid(dblist, org = "human", simplify = TRUE, type = "physical", mimic.old = FALSE)
Arguments
dblist
data.frame containing the BioGRID data.
org
target organism (default: "human")
simplify
whether to eliminate redundant edges (default TRUE)
type
type of interaction (physical or genetic) to include (default: "physical")
mimic.old
mimic old behavior of processBiogrid() when interactions for multiple species could be retrieved. Used only for testing.
Value
An igraph object.
Author(s)
Diego Diez
rTRM documentation built on Nov. 8, 2020, 5:52 p.m.
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Description Usage Arguments Value Author(s)
Description
Process a data.frame with BioGRID data into a network for a target organism.
Usage
1 | processBiogrid(dblist, org = "human", simplify = TRUE, type = "physical", mimic.old = FALSE)
|
Arguments
dblist |
data.frame containing the BioGRID data. |
org |
target organism (default: "human") |
simplify |
whether to eliminate redundant edges (default TRUE) |
type |
type of interaction (physical or genetic) to include (default: "physical") |
mimic.old |
mimic old behavior of processBiogrid() when interactions for multiple species could be retrieved. Used only for testing. |
Value
An igraph object.
Author(s)
Diego Diez
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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