getOrthologs: Obtain the mapping to Entrez Gene identifiers in the given...
In rTRM: Identification of transcriptional regulatory modules from PPI networks
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Obtain the mapping to Entrez Gene identifiers in the given organism.
Usage
1
getOrthologs(filter, organism, dbname = NULL)
Arguments
filter
entrezgene identifiers for the original mapping (PWM to gene). These can belong to diverse species and correspond to the "entrezgene" column obtained with getMaps() function.
organism
target organisms, currently supported "human" and "mouse"
dbname
Details
If organism is not specified the entire table of orthologs (with all supported species) is returned.
Value
A data.frame object with ortholog information.
Author(s)
Diego Diez
Examples
1
getOrthologs(organism = "human")
rTRM documentation built on Nov. 8, 2020, 5:52 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Obtain the mapping to Entrez Gene identifiers in the given organism.
Usage
1 | getOrthologs(filter, organism, dbname = NULL)
|
Arguments
filter |
entrezgene identifiers for the original mapping (PWM to gene). These can belong to diverse species and correspond to the "entrezgene" column obtained with getMaps() function. |
organism |
target organisms, currently supported "human" and "mouse" |
dbname |
Details
If organism is not specified the entire table of orthologs (with all supported species) is returned.
Value
A data.frame object with ortholog information.
Author(s)
Diego Diez
Examples
1 | getOrthologs(organism = "human")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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