plotGraph: Plot an graph in igraph format.

In rTRM: Identification of transcriptional regulatory modules from PPI networks

Description

This function plots graphs of the class igraph.

Usage

plotGraph(g, layout = layout.fruchterman.reingold, mar = .5, vertex.pch = 21, vertex.cex, vertex.col, vertex.bg, vertex.lwd, edge.col, edge.lwd, edge.lty, label = TRUE, label.col, label.cex, label.pos = NULL, label.offset = 1.5, adjust.label.col = FALSE, normalize.layout = TRUE)

Arguments

g	a network object.
layout	graph layout, either a function or the output of a layout function.
mar	plot margin.
vertex.pch	node size.
vertex.cex	node size.
vertex.col	node line color.
vertex.bg	node background color.
vertex.lwd	node line width.
edge.col	edge color.
edge.lwd	edge line width.
edge.lty	edge line type.
label	logical; whether to plot labels.
label.col	label color.
label.cex	label expansion.
label.pos	label position.
label.offset	label offset.
adjust.label.col	whether to automatically adjust label color depending on the luminance of the node's color/s.
normalize.layout	whether to apply layout.norm (with limits xmin=-1, xmax=1, ymin=-1, ymax=1) to the layout.

Author(s)

Diego Diez

rTRM documentation built on Nov. 8, 2020, 5:52 p.m.