API for rTRM
Identification of transcriptional regulatory modules from PPI networks

Global functions
annotateFreq Man page Source code
annotateModule Man page Source code
annotateTFclass Source code
annotateTRM Man page Source code
annotateTarget Source code
biogrid_hs Man page Source code
biogrid_mm Man page Source code
checkInNetwork Source code
checkParam Source code
checkValid Source code
dcor Source code
findNeigh Source code
findTRM Man page Source code
floating.pie Source code
getAnnotations Man page Source code
getBiogridData Man page Source code
getConcentricList Man page Source code
getCoordinates Source code
getDefaultDb Source code
getLargestComp Man page Source code
getLegend Source code
getMapFromOrg Source code
getMaps Man page Source code
getMatrices Man page Source code
getMotifsFromEntrezgene Man page Source code
getMotifsFromSymbol Man page Source code
getNiceColors Source code
getNode Source code
getOrthologFromMatrix Man page Source code
getOrthologs Man page Source code
getOrthologsFromBiomart Man page Source code
getSQLresult Source code
getSequencesFromGenome Man page Source code
getSimilarityMatrix Man page Source code
getTFclass Man page Source code
getTFclassColors Source code
getTFclassFromEntrezgene Man page Source code
getTFterms Man page Source code
getTaxidFromOrg Source code
initBiomart Man page Source code
layout.arc Man page Source code
layout.concentric Man page Source code
lum Source code
lum2 Source code
plotDegree Man page Source code
plotGraph Man page Source code
plotTRM Man page Source code
plotTRMlegend Man page Source code
processBiogrid Man page Source code
rTRM Man page
rTRM-package Man page
reduceGraph Source code
removeVertices Man page Source code
writeTRMreport Man page Source code
rTRM documentation built on May 2, 2018, 4:43 a.m.