Description Usage Arguments Author(s)
Uses information about expression, enrichment and parent PPI network to annotate a subgraph.
1 | annotateModule(g, enrich, trm, targets, ppi, exprs, tfs)
|
g |
graph to annotate in igraph format. |
enrich |
list of enriched transcription factors (or motifs). |
trm |
TRM to compare with (to identify bridges). |
targets |
list of target transcription factors (typically those with ChIP-seq data). |
ppi |
parent PPI network (to check membership of nodes). |
exprs |
list of entrezgene ids representing expressed genes. |
tfs |
Diego Diez
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