getSequencesFromGenome: Retrieves a set of sequences from a BSgenome object and...
In rTRM: Identification of transcriptional regulatory modules from PPI networks
Description
Usage
Arguments
Author(s)
Description
This is just a wrapper to getSeq() in package Biostrings that facilitates adding a label to each sequence.
Usage
1
getSequencesFromGenome(BED, genome, append.id)
Arguments
BED
file with peak locations in BED format.
genome
a BSgenome object (e.g. Mmusculus)
append.id
optional label to append to each sequence id.
Author(s)
Diego Diez
rTRM documentation built on Nov. 8, 2020, 5:52 p.m.
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Description Usage Arguments Author(s)
Description
This is just a wrapper to getSeq() in package Biostrings that facilitates adding a label to each sequence.
Usage
1 | getSequencesFromGenome(BED, genome, append.id)
|
Arguments
BED |
file with peak locations in BED format. |
genome |
a BSgenome object (e.g. Mmusculus) |
append.id |
optional label to append to each sequence id. |
Author(s)
Diego Diez
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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