getSequencesFromGenome: Retrieves a set of sequences from a BSgenome object and...

Description Usage Arguments Author(s)

Description

This is just a wrapper to getSeq() in package Biostrings that facilitates adding a label to each sequence.

Usage

1
getSequencesFromGenome(BED, genome, append.id)

Arguments

BED

file with peak locations in BED format.

genome

a BSgenome object (e.g. Mmusculus)

append.id

optional label to append to each sequence id.

Author(s)

Diego Diez



Search within the rTRM package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.