Files in rTRM
Identification of transcriptional regulatory modules from PPI networks
NAMESPACE
DESCRIPTION
build/vignette.rds
build/rTRM.pdf
data/datalist
data/biogrid_hs.rda
data/biogrid_mm.rda
R/tools.R
R/ppi.R
R/dataset.R
R/database.R
R/tfclass.R
R/plot.R
R/zzz.R
R/layout.R
R/ortholog.R
R/graph.R
vignettes/rTRM_Introduction.Rnw
vignettes/workflow.pdf
man/layout.arc.Rd
man/plotTRM.Rd
man/getMaps.Rd
man/writeTRMreport.Rd
man/biogrid_mm.Rd
man/getBiogridData.Rd
man/initBiomart.Rd
man/getOrthologsFromBiomart.Rd
man/getTFterms.Rd
man/layout.concentric.Rd
man/plotGraph.Rd
man/processBiogrid.Rd
man/getLargestComp.Rd
man/getOrthologFromMatrix.Rd
man/plotDegree.Rd
man/getOrthologs.Rd
man/getTFclass.Rd
man/annotateFreq.Rd
man/getMotifsFromEntrezgene.Rd
man/getTFclassFromEntrezgene.Rd
man/getAnnotations.Rd
man/annotateModule.Rd
man/findTRM.Rd
man/getMatrices.Rd
man/getSimilarityMatrix.Rd
man/getMotifsFromSymbol.Rd
man/annotateTRM.Rd
man/removeVertices.Rd
man/getSequencesFromGenome.Rd
man/getConcentricList.Rd
man/rTRM-package.Rd
man/biogrid_hs.Rd
man/plotTRMlegend.Rd
tests/runTests.R
inst/NEWS
inst/CITATION
inst/doc/rTRM_Introduction.R
inst/doc/rTRM_Introduction.Rnw
inst/doc/rTRM_Introduction.pdf
inst/db/database.db
inst/extra/test.R
inst/extra/pwm_mm_logn.rda
inst/extra/example.rda
inst/extra/sox2_enr.rda
inst/extra/ESC-expressed.txt
inst/extra/ESC_Sox2_peaks.txt
inst/extra/sox2_motif_list.rda
inst/unitTests/test_findTRM.R
