API for rnaSeqMap
rnaSeq secondary analyses
| Global functions | |
|---|---|
| .chr.convert | Source code |
| .chromosome.char | Source code |
| .chromosome.number | Source code |
| .countRSReads | Source code |
| .countz | Source code |
| .covFun | Source code |
| .derywatywka | Source code |
| .exonCoverage | Source code |
| .fillRleList | Source code |
| .fiveCol2GRanges | Source code |
| .geneCoverage | Source code |
| .getAvgND | Source code |
| .homo_sapiens | Source code |
| .localMax | Source code |
| .methylobacterium_extorquens | Source code |
| .munion | Source code |
| .mus_musculus | Source code |
| .onLoad | Source code |
| .pochodna | Source code |
| .rattus_norvegius | Source code |
| .readsForGene | Source code |
| .rmse | Source code |
| .rsCount | Source code |
| .sigRegions | Source code |
| .tunion | Source code |
| .wytnij | Source code |
| NucleotideDistr-class | Man page |
| RleList2matrix | Man page |
| SeqReads | Man page |
| SeqReads-class | Man page |
| addBamData | Man page Source code |
| addDataToReadset | Man page Source code |
| addExperimentsToReadset | Man page Source code |
| allCamelMeasuresForRegion | Man page Source code |
| averageND | Man page |
| bam2sig | Man page Source code |
| buildDESeq | Man page Source code |
| buildDGEList | Man page Source code |
| combineND | Man page Source code |
| densityNormalize | Man page Source code |
| diff_area | Man page Source code |
| diff_derivative_area | Man page Source code |
| distrCOVPlot | Man page Source code |
| distrCOVPlotg | Man page Source code |
| distrSIPlot | Man page Source code |
| distribs | Man page Source code |
| findRegionsAsIR | Man page Source code |
| findRegionsAsND | Man page Source code Source code |
| fiveCol2GRanges | Man page Source code |
| gRanges2CamelMeasures | Man page Source code |
| gcoverage | Man page |
| geneInChromosome | Man page Source code |
| generatorAdd | Man page Source code |
| generatorAddSquare | Man page Source code |
| generatorMultiply | Man page Source code |
| generatorPeak | Man page Source code |
| generatorSynth | Man page Source code |
| generatorTrunc | Man page Source code |
| getBamData | Man page Source code |
| getCoverageFromRS | Man page |
| getData | Man page Source code |
| getDistr | Man page Source code |
| getExpDescription | Man page Source code |
| getFCFromND | Man page Source code |
| getSIFromND | Man page Source code |
| getSumsExp | Man page Source code |
| ghistogram | Man page |
| globalCountsNormalize | Man page Source code |
| hump_diff1 | Man page Source code |
| hump_diff2 | Man page Source code |
| ks_test | Man page Source code |
| log2ND | Man page Source code |
| min_maxNormalize | Man page Source code |
| newNuctleotideDistr | Man page Source code |
| newSeqReads | Man page Source code |
| newSeqReadsFromGene | Man page Source code |
| normalizeBySum | Man page Source code |
| parseGff3 | Man page Source code |
| plotCoverageHistogram | Man page Source code |
| plotExonCoverage | Man page Source code |
| plotGeneCoverage | Man page Source code |
| plotGeneExonCoverage | Man page Source code |
| plotRegionCoverage | Man page Source code |
| plotSI | Man page Source code |
| pp_derivative_plot | Man page Source code |
| pp_plot | Man page Source code |
| qq_derivative_plot | Man page Source code |
| qq_plot | Man page Source code |
| readsInRange | Man page Source code |
| regionBasedCoverage | Man page Source code |
| regionCoverage | Man page Source code |
| regionmining | Man page |
| rs.list | Man page |
| sample_data_rnaSeqMap | Man page |
| setData | Man page Source code |
| setSAXPYData | Man page Source code |
| setSpecies | Man page Source code |
| simplePlot | Man page |
| spaceInChromosome | Man page Source code |
| splicingind | Man page |
| standarizationNormalize | Man page Source code |
| sumND | Man page Source code |
