addBamData: addBamData - getting sample data from BAM file.
In rnaSeqMap: rnaSeq secondary analyses

Add data from experimental samples stored in BAM file.

1	addBamData(rs, file, exp, phenoDesc=NULL)

`rs`	SeqReads object to modify
`file`	BAM file to read
`exp`	Numbers of sample slot in the object
`phenoDesc`	A vector to add to phenoData

SeqReads object with samples added from the BAM files. List of BAM files comes from the covdesc. The covdesc content becomes phenoData of the object.

Michal Okoniewski, Anna Lesniewska

#  if (xmapConnected())  
#  {
#    rs <- newSeqReads(1,1,20000,1)
#    rs <- addBamData(rs,1:3)
#  }

rnaSeqMap documentation built on Nov. 8, 2020, 5:50 p.m.

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