regionCoverage: regionCoverage
In rnaSeqMap: rnaSeq secondary analyses
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Finds all the reads for a genomic range
Usage
1
regionCoverage(chr, start, end, strand, ex, db = "FALSE" )
Arguments
chr
Chromosome
start
Start of the region on a chromosome
end
End of the region on a chromosome
strand
Genome strand: 1 or -1
ex
experiment
db
Use database (SQL) implementation of the algorithm
Value
coverage vector, independent from NucleotideDistr
Author(s)
Michal Okoniewski, Anna Lesniewska
Examples
1
2
3
4
# if (xmapConnected())
# {
# tmp <- regionCoverage( 1, 10000, 20000, 1,3)
# }
rnaSeqMap documentation built on Nov. 8, 2020, 5:50 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Finds all the reads for a genomic range
Usage
1 | regionCoverage(chr, start, end, strand, ex, db = "FALSE" )
|
Arguments
chr |
Chromosome |
start |
Start of the region on a chromosome |
end |
End of the region on a chromosome |
strand |
Genome strand: 1 or -1 |
ex |
experiment |
db |
Use database (SQL) implementation of the algorithm |
Value
coverage vector, independent from NucleotideDistr
Author(s)
Michal Okoniewski, Anna Lesniewska
Examples
1 2 3 4 | # if (xmapConnected())
# {
# tmp <- regionCoverage( 1, 10000, 20000, 1,3)
# }
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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