measures: Measures
In rnaSeqMap: rnaSeq secondary analyses
Description
Usage
Arguments
Author(s)
Examples
Description
Various measures to find differential expression.
Usage
1
2
3
4
5
6
7
8
9
ks_test(dd)
diff_area(dd, cconst)
diff_derivative_area(dd, cconst)
qq_plot(dd)
qq_derivative_plot(dd)
pp_plot(dd)
pp_derivative_plot(dd)
hump_diff1(dd)
hump_diff2 (dd)
Arguments
dd
a matrix with 2 columns for samples and rows for nucleotides, containing
coverage data (like from BED files)
cconst
NULL default
The measures give various assesment of the difference between two sequencing samples
shapes. Full description will follow in the paper.
Author(s)
Anna Lesniewska,Michal Okoniewski
Examples
1
2
3
4
# if (xmapConnected())
# {
# ks_test(dd)
# }
rnaSeqMap documentation built on Nov. 8, 2020, 5:50 p.m.
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Description Usage Arguments Author(s) Examples
Description
Various measures to find differential expression.
Usage
1 2 3 4 5 6 7 8 9 | ks_test(dd)
diff_area(dd, cconst)
diff_derivative_area(dd, cconst)
qq_plot(dd)
qq_derivative_plot(dd)
pp_plot(dd)
pp_derivative_plot(dd)
hump_diff1(dd)
hump_diff2 (dd)
|
Arguments
dd |
a matrix with 2 columns for samples and rows for nucleotides, containing coverage data (like from BED files) |
cconst |
NULL default |
The measures give various assesment of the difference between two sequencing samples shapes. Full description will follow in the paper.
Author(s)
Anna Lesniewska,Michal Okoniewski
Examples
1 2 3 4 | # if (xmapConnected())
# {
# ks_test(dd)
# }
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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